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feat: auto-detect sequencing platform per read in FIRE#116

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cademirch merged 1 commit into
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feat/detect-seq-platform
Jul 21, 2026
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feat: auto-detect sequencing platform per read in FIRE#116
cademirch merged 1 commit into
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feat/detect-seq-platform

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Detect sequencing platform on per read basis via platform specific aux tags (if available) or via read name.

This enables FIRE to handle BAMs with reads from both ONT and Pacbio. If we can't determine based on tags or readname, we default to Pacbio. Using the --ont flag forces all reads to be treated as ONT regardless of tags or name.

PacBio sources:

ONT Sources:

@cademirch
cademirch requested a review from mrvollger July 20, 2026 22:04
@cademirch
cademirch force-pushed the feat/detect-seq-platform branch from 303e23d to 6dae4ea Compare July 20, 2026 22:09
@cademirch
cademirch merged commit 36c740e into main Jul 21, 2026
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cademirch pushed a commit that referenced this pull request Jul 21, 2026
## 🤖 New release

* `fibertools-rs`: 0.10.1 -> 0.11.0 (✓ API compatible changes)

<details><summary><i><b>Changelog</b></i></summary><p>

<blockquote>

##
[0.11.0](v0.10.1...v0.11.0)
- 2026-07-21

### Added

- auto-detect sequencing platform per read in FIRE
([#116](#116))

### Other

- add install (curl) section to fibertools-rs release notes
- drop invalid protect_breaking_commits field from release-plz config
- only cut a release for feat/fix commits
- update docs on releases
</blockquote>


</p></details>

---
This PR was generated with
[release-plz](https://github.com/release-plz/release-plz/).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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