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engkinandatama/README.md

Engki Nandatama

Typing SVG

About Me

Computational biologist & research engineer based in Yogyakarta, Indonesia. I study biological systems, build computational tools for genomics and diagnostics, and communicate science.

class ComputationalBiologist:
    def __init__(self):
        self.name = "Engki Nandatama"
        self.role = "Computational Biologist & Research Engineer"
        self.location = "Yogyakarta, Indonesia"
        self.pillars = ["Research", "Engineering", "Writing", "The Scientist's Eyes"]
        self.motto = "Observe. Understand. Build. Share."
    
    def current_focus(self):
        return [
            "Genomics & Molecular Diagnostics Tools",
            "Spatial Analytics & Environmental Modeling (GIS)",
            "Automated Scientific Workflows & Data Pipelines"
        ]

Tech Stack & Tools

Core & Scripting

Python JavaScript TypeScript HTML5 CSS3 R

Web & Frontend

React Next.js Astro Tailwind CSS Framer Motion

Data Science, ML & GIS

Pandas Scikit-Learn PyTorch Matplotlib Seaborn DuckDB QGIS GeoPandas

Bioinformatics & Scientific Workflows

Nextflow Snakemake Biopython

Backend & Infrastructure

FastAPI Prisma Supabase Docker

Let's Connect

LinkedIn   Portfolio   Behance   Kaggle
ORCID   Google Scholar   Email

"Observe. Understand. Build. Share."

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  1. CORE-Lab-Research/primerlab-genomic CORE-Lab-Research/primerlab-genomic Public

    A modular genomic toolkit focused on automated primer design, sequence validation, and workflow orchestration. Built for reliability, reproducibility, and scalable bioinformatics workflows.

    Python 1

  2. sumatra-flood-deforestation sumatra-flood-deforestation Public

    Analysis of deforestation-disaster linkages in the November 2025 Sumatra floods using environmental data and social media triangulation.

    Python

  3. CORE-Lab-Research/omicaflow CORE-Lab-Research/omicaflow Public

    Modular, reproducible multi-omics pipeline for cancer research with MVP implementation focusing on 3-omics: DNA (SNV/CNV) → RNA (DEG) → Methylation.

    R

  4. AMR-gene-mobility AMR-gene-mobility Public

    A reproducible end-to-end bioinformatics pipeline for comparative analysis of AMR gene–mobile genetic element associations across human gut metagenomes from Europe, Asia, and Africa.

    Python

  5. h2h-genomic-signatures h2h-genomic-signatures Public

    An end-to-end automated Snakemake pipeline for comparative genomic analysis of Zoonotic RNA viruses

    Python

  6. kpneumo-wgs-sea kpneumo-wgs-sea Public

    Reproducible Snakemake workflow for whole-genome sequencing (WGS) and downstream genomic characterization of Klebsiella pneumoniae species complex (KpSC) clinical isolates from Southeast Asia.

    Python