docs(example): ship real synthesis artifact for cholesterol example#1
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Replaces the v0.1.0 placeholders in examples/cholesterol_primary_prevention/ with the actual artifact the protocol produced (project 216f7599-1c1b-487c-a269-e67277da0e42, completed 2026-06-01). - synthesis.docx + synthesis.pdf: native Word output with embedded forest plot, stance x tier heat-table, PRISMA flow. - synthesis.md: content-faithful markdown (image-free). - run.log: counts reconciled to actual DB rows (135 evidence rows, 7 quote-spanned and cited, 11/20 Pass-2 retrieved). - README.md: dropped v0.2-placeholder caveat; rewrote "what the protocol caught" to reflect real run. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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Pull request overview
This PR updates the cholesterol primary-prevention example to include the actual synthesis artifact output, replacing prior placeholder content and aligning the example’s narrative/logs with the real run.
Changes:
- Replace placeholder
synthesis.mdwith a content-faithful, image-free synthesis writeup matching the shipped.docx/.pdfartifacts. - Update
run.logto reflect the actual run metadata and reconciled phase counts (135 → 20 → 11 → 7). - Refresh the example
README.mdto describe the new artifacts and “what the protocol caught” in terms consistent with this run.
Reviewed changes
Copilot reviewed 2 out of 5 changed files in this pull request and generated 2 comments.
| File | Description |
|---|---|
| examples/cholesterol_primary_prevention/synthesis.md | Replaces placeholder with the full markdown synthesis content and references. |
| examples/cholesterol_primary_prevention/run.log | Updates run metadata, phase rollups, and notes to match the real execution. |
| examples/cholesterol_primary_prevention/README.md | Updates the directory guide and explanation to match shipped artifacts and run outcomes. |
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| ## Effect-size summary — cited evidence | ||
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| All numerics below are verbatim from the cited row's `quote_span` field in `research_evidence`. DOIs link to source. | ||
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| ## References (cited) | ||
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| 1. Morsell B, Hamed M, Scwartz S, Martinez B, Roble K, Kahan J, Habib P. The role of lipid lowering medications in the primary prevention of cardiovascular disease and mortality: a meta-analysis of randomized controlled trials. *BMC Cardiovasc Disord.* 2026;26:372. DOI:10.1186/s12872-026-05659-2 |
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Summary
Ships the actual synthesis artifact the protocol produced for the cholesterol primary-prevention example. ~488 KB .docx, ~514 KB .pdf in-tree.
synthesis.docx— native Word with embedded forest plot, stance × tier heat-table, PRISMA flow, effect-size tablesynthesis.pdf— PDF export of the samesynthesis.md— content-faithful markdown (image-free)run.log— reconciled to actual run (135 → 20 → 11 → 7). Project id216f7599-1c1b-487c-a269-e67277da0e42README.md— drops v0.2 placeholder caveat; rewrites "what the protocol caught" to match the runTest plan
synthesis.mdsynthesis.docxopens with forest plot + PRISMA visiblesynthesis.pdfrenders same content🤖 Generated with Claude Code