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Update ChatSpatial entry with paper reference #8

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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -53,7 +53,7 @@ Following subsection will be subsequently divided by argument while collecting t
### Spatial Transcriptomics Methods & Tools
|Year|Title|Language|Description|Reference|
|:-:|:--|:-:|:--|:--|
|2025|[ChatSpatial](https://github.com/cafferychen777/ChatSpatial)|Python|MCP server enabling spatial transcriptomics analysis via natural language. Integrates 60+ methods for spatial domains, deconvolution, cell communication, trajectory analysis across Visium, Xenium, MERFISH.|[PyPI](https://pypi.org/project/chatspatial/) / [Docs](https://cafferychen777.github.io/ChatSpatial/)|
|2026|[ChatSpatial](https://github.com/cafferychen777/ChatSpatial)|Python|MCP server enabling spatial transcriptomics analysis via natural language. Integrates 60+ methods for spatial domains, deconvolution, cell communication, trajectory analysis across Visium, Xenium, MERFISH.|[Yang et al. 2026](https://doi.org/10.64898/2026.02.26.708361) / [PyPI](https://pypi.org/project/chatspatial/) / [Docs](https://cafferyang.com/ChatSpatial/)|
|2021|[Giotto](http://spatialgiotto.rc.fas.harvard.edu/)|R|Toolbox for integrative analysis and visualization of spatial expression data|[Dries et al. 2021](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02286-2)|
|2025|[FlashDeconv](https://github.com/cafferychen777/flashdeconv)|Python|High-performance spatial deconvolution using randomized sketching. Processes 1M spots in ~3 min with linear O(N) scaling.|[Yang et al. 2025](https://doi.org/10.64898/2025.12.22.696108)|

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