v0.13.1

v0.13.1 (2026-07-17)

Bug Fixes

• tooling: Align Ruff with Python 3.11 (#318, 2cbe563)

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Detailed Changes: v0.13.0...v0.13.1

v0.13.0

v0.13.0 (2026-07-17)

Features

• eval: Discover trials from job metadata (#321, 3365512)

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Detailed Changes: v0.12.4...v0.13.0

v0.12.4

v0.12.4 (2026-07-17)

Bug Fixes

• eval: Serialize synthetic CUDA batch jobs (#315, cdd2f74)

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Detailed Changes: v0.12.3...v0.12.4

v0.12.3

v0.12.3 (2026-07-17)

Documentation

• deps: Explain NumPy 1.x cap (#316, b95bc75)

• models: Standardize model_atom_array docstring across wrappers (#296, 38f244a)

Performance Improvements

• rf3: Reuse initialized model runtime (#317, d6505dc)

Refactoring

• fk_steering: Extract per-particle guided step into a helper (#299, 564dd4a)

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Detailed Changes: v0.12.2...v0.12.3

v0.12.2

v0.12.2 (2026-07-08)

Bug Fixes

• protenix: Resolve MSA typecheck errors (#266, 88b3e69)

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Detailed Changes: v0.12.1...v0.12.2

v0.12.1

v0.12.1 (2026-07-08)

Bug Fixes

• types: Resolve typecheck warnings (#269, ca20615)

Continuous Integration

• codecov: Collect and upload coverage from cpu-tests (#298, b7ac722)

Refactoring

• msa: Remove unused Protenix a3m writes in _compute_msa (#295, e44b63c)

Testing

• protenix: Skip checkpoint fixture when weights absent instead of downloading (#294, 15b0063)

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Detailed Changes: v0.12.0...v0.12.1

v0.12.0

v0.12.0 (2026-06-29)

Chores

• packaging: Consolidate uv project metadata (#271, 3f178aa)

Features

• RSCC eval updates (#224, fbc70a5)

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Detailed Changes: v0.11.1...v0.12.0

v0.11.1

v0.11.1 (2026-06-23)

Bug Fixes

• eval: Align synthetic density occupancy handling (#268, dd9bef8)

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Detailed Changes: v0.11.0...v0.11.1

v0.11.0

v0.11.0 (2026-06-23)

Features

• guidance: Add --alignment-reverse-diffusion arg (#264, 0cb0ba2)

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Detailed Changes: v0.10.0...v0.11.0

v0.10.0

v0.10.0 (2026-06-19)

Features

• Add RMSD metric (#227, b7201f4)

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Detailed Changes: v0.9.1...v0.10.0