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daavidhf/README.md

Hi, I'm David 👋

MSc student in Health Data Science (URV, in collaboration with UB, UAB, UPC, UdG, UdL, UVic-UCC & Grenoble Alpes) | BSc Biomedical Engineer & BSc Industrial Electronics and Automatic Control Engineer (UPC, Barcelona)

I work at the intersection of biomedical engineering and applied data science: signal processing, clinical data pipelines, and ML/AI systems for healthcare — with hands-on exposure to cloud infrastructure (AWS) and reproducible computing (Snakemake, SLURM, Docker).

  • 🧠 Interests: clinical NLP & EHR, medical imaging, survival analysis, MLOps for health data, cloud architecture for regulated environments

  • 📍 Based in Barcelona, Spain

  • 📫 Reach me: hidalgo.fabregas.david@gmail.com · LinkedIn

🧰 Core stack

Python R SQL scikit-learn PyTorch TensorFlow NetworkX · AWS (EC2, S3, Lambda, VPC) Docker SLURM Snakemake · MIMIC-III DICOM ECG/PPG

(See pinned repos below for details, code, and READMEs.)

Pinned Loading

  1. chd-classifier-api chd-classifier-api Public

    Forked from koershuis/SP_Final_Project_E

    Random Forest pipeline classifying 10-year coronary heart disease risk (4,000+ patient cohort), deployed as a FastAPI service in Docker. Team project — my role: API design & deployment.

    Jupyter Notebook

  2. alzheimer-semantic-network-classifier alzheimer-semantic-network-classifier Public

    Graph-based classifier separating Alzheimer's patients from healthy controls using semantic networks built from verbal fluency data, community detection, and Random Forest — extends the Zemla & Aus…

    HTML

  3. ecg-arrhythmia-deep-learning ecg-arrhythmia-deep-learning Public

    RNN and LSTM sequence classifiers for cardiac arrhythmia detection (MIT-BIH ECG): 8 hand-engineered QRS/RR/ST features per heartbeat, patient-grouped sliding windows, and clinically-driven metric s…

    Jupyter Notebook

  4. ckd-diagnostic-gap ckd-diagnostic-gap Public

    Analyzing the 10-year diagnostic gap in Chronic Kidney Disease across NHANES survey cycles (2007–2018): biomarker derivation (eGFR/uACR, KDIGO), statistical testing of socioeconomic drivers, and ex…

    HTML

  5. BioInfo-SeqAnalysis BioInfo-SeqAnalysis Public

    Reproducible bioinformatics pipeline: FASTA parsing, DP sequence alignment with CIGAR traceback, and regex-based stats — fully automated as a Snakemake DAG in an isolated Conda environment.

    Python

  6. hpc-slurm-orchestrator hpc-slurm-orchestrator Public

    Python orchestrator for dependent SLURM job arrays on an HPC cluster — dynamic task discovery, parallel job-array computation, and a dependency-gated consolidation phase.

    Python