This repository hosts tutorials and reproducible case studies for scTypeEval, an R/Bioconductor framework to evaluate single-cell transcriptomics cell type annotations in the absence of ground truth.
Main scTypeEval resources:
- GitHub: https://github.com/carmonalab/scTypeEval
- Bioconductor: https://www.bioconductor.org/packages/release/bioc/html/scTypeEval.html
- Issues and comments: https://github.com/carmonalab/scTypeEval/issues
If you use scTypeEval, please cite:
Garnica J, Andreatta M, Carmona SJ (2026). Evaluating cell type annotations in single-cell omics in the absence of ground truth. bioRxiv. https://doi.org/10.64898/2026.06.10.731285