Dev

.github/workflows/Dev-Container-Publish.yaml

@@ -3,6 +3,9 @@ name: Dev Container Publish
 on:
   workflow_dispatch:
 
+env:
+  FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
+
 jobs:
   prepare:
     runs-on: ubuntu-latest

.github/workflows/Sync-dev-with-main.yml

@@ -7,6 +7,9 @@ on:
       - completed
   workflow_dispatch:
 
+env:
+  FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
+
 jobs:
   rebase:
     runs-on: ubuntu-latest

.github/workflows/Tag-and-Release.yml

@@ -5,6 +5,9 @@ on:
     types: [closed]
     branches: ['main']
 
+env:
+  FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
+
 jobs:
   release:
     runs-on: ubuntu-latest

.github/workflows/Update-Version-and-create-Releases-PR.yml

@@ -9,6 +9,9 @@ on:
         type: string
         pattern: '^[0-9]+\.[0-9]+\.[0-9]+$'
 
+env:
+  FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
+
 jobs:
   version:
     runs-on: ubuntu-latest
@@ -52,7 +55,7 @@ jobs:
           title: "Release: Candidate Version ${{ steps.update_version.outputs.version }} Pull Request"
           body: "This pull request contains the updated VERSION file with the new release version and an updated CHANGELOG.md file."
           base: main
-          assignees: paulstretenowich
-          reviewers: paulstretenowich
+          assignees: paulstretenowich,MareikeJaniak
+          reviewers: paulstretenowich,MareikeJaniak
           delete-branch: true
           labels: automated pr

.github/workflows/reusable-docker-publish.yml

@@ -12,7 +12,7 @@ on:
       platforms:
         required: false
         type: string
-        default: linux/amd64,linux/arm64
+        default: linux/amd64
       dockerfile:
         required: false
         type: string
@@ -25,6 +25,9 @@ on:
       token:
         required: true
 
+env:
+  FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
+
 jobs:
   docker-publish:
     runs-on: ubuntu-latest
@@ -41,9 +44,6 @@ jobs:
       - name: Update package lists
         run: sudo apt-get update
 
-      - name: Install QEMU
-        uses: docker/setup-qemu-action@v3
-
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@v3
 

RunDashboard/config.ini

@@ -22,4 +22,11 @@ dup=['report_saved_raw_data']['multiqc_general_stats']
 vcf=['report_general_stats_data']
 bases=['report_saved_raw_data']['multiqc_general_stats']
 
-# add more sequencers as required
+[miseq]
+depth=['report_saved_raw_data']['multiqc_general_stats']
+yield1=['report_saved_raw_data']['multiqc_general_stats']
+q30=['report_saved_raw_data']['multiqc_general_stats']
+dup=['report_saved_raw_data']['multiqc_general_stats']
+vcf=['report_general_stats_data']
+bases=['report_saved_raw_data']['multiqc_general_stats']
+# add more sequencers as required