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updating cit script for new chunk_and_submit_genpipes tool #14

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Merged
MareikeJaniak merged 1 commit into from
Jun 11, 2026
Merged

updating cit script for new chunk_and_submit_genpipes tool #14

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3 changes: 1 addition & 2 deletions integration_tests.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -360,9 +360,8 @@ submit () {
echo "Nothing to submit in ${command}..."
else
echo submitting $pipeline
genpipes tools chunk_genpipes ${command} ${PIPELINE_FOLDER}/chunk
# will retry submit 10 times
genpipes tools submit_genpipes -l 10 -n 999 -S $SCHEDULER ${PIPELINE_FOLDER}/chunk \
genpipes tools chunk_and_submit_genpipes ${command} ${PIPELINE_FOLDER}/chunk -l 10 -q 999 -S $SCHEDULER \
| tee -a ${SCRIPT_OUTPUT}/all_jobs
RET_CODE_SUBMIT_SCRIPT=${PIPESTATUS[0]}
ExitCodes+=(["${PIPELINE_LONG_NAME} submit"]="$RET_CODE_SUBMIT_SCRIPT")
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