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Add a paper-fidelity model-training engine (nested-CV Monte-Carlo + ensembles) behind predict_samples
prio:3Still importantStill importanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.#276 In breimanntools/aaanalysis;Add packaging CI gates: wheel/sdist build + install-from-wheel smoke + public-API import test
prio:2ImportantImportanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.Add scverse / AnnData I/O adapters (from_anndata / to_anndata) via optional [omics] extra
prio:3Still importantStill importanttopic:dataData related improvementsData related improvementstype:featureImplementation of featureImplementation of featureStatus: Open.Explore symbolic-regression surrogate for interpretable model-fitness rules (XAI)
prio:3Still importantStill importanttopic:XAIExplainability methods integrated into AAanalysisExplainability methods integrated into AAanalysistype:featureImplementation of featureImplementation of featureStatus: Open.#265 In breimanntools/aaanalysis;Optional GPU backend for CPP feature computation (CuPy/torch, CPU-equivalent, opt-in)
prio:3Still importantStill importanttopic:coreCore featuresCore featurestopic:performancePerformance improvementsPerformance improvementsStatus: Open.#263 In breimanntools/aaanalysis;Add SeqOpt: multi-objective ML-guided directed-evolution optimizer (NSGA-II reimplementation)
prio:1Very importantVery importanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.#261 In breimanntools/aaanalysis;Golden pipelines: second convenience API
aaanalysis.pipe(aap) + sklearn transformerprio:2ImportantImportanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.#241 In breimanntools/aaanalysis;Create the new AAanalysis data-flow infogram (df_seq → df_parts → df_feat → model → explain)
prio:3Still importantStill importanttopic:coreCore featuresCore featurestype:dcosImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#227 In breimanntools/aaanalysis;Refresh Usage Principles landing-page diagrams: swap in the new data-flow infogram + drop the mini-ecosystem figure
prio:3Still importantStill importanttopic:coreCore featuresCore featurestype:dcosImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#226 In breimanntools/aaanalysis;Dense-plot label overlap gate + global
auto_fontoption: auto-optimize plot fonts package-wide (+ auto-size feature_map)prio:2ImportantImportanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.epic: ecosystem integration — consume upstream + descriptors, expose downstream (sklearn / XAI / design)
prio:3Still importantStill importanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.Session-persistent plot style (avoid repeating aa.plot_settings())
prio:2ImportantImportanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.