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10 changes: 10 additions & 0 deletions docs/api/core.md
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Expand Up @@ -19,6 +19,11 @@ appear once in the API index.
.. automodule:: jitr.utils.constants
```

```{eval-rst}
.. automodule:: jitr.utils.density
:members:
```

```{eval-rst}
.. automodule:: jitr.utils.free_solutions
:members:
Expand All @@ -38,3 +43,8 @@ appear once in the API index.
.. automodule:: jitr.utils.mass
:members:
```

```{eval-rst}
.. automodule:: jitr.utils.poly
:members:
```
24 changes: 24 additions & 0 deletions docs/api/folding.md
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# Folding package

The folding page documents the finite-range folding helpers and JLM/JLMB
parameterizations. The reusable analytic/tabulated density helpers live in
`jitr.utils.density` and are documented on the core API page.

```{eval-rst}
.. automodule:: jitr.folding
:members:
```

## Quadrature and folding helpers

```{eval-rst}
.. automodule:: jitr.folding.folding
:members:
```

## JLM parameterization

```{eval-rst}
.. automodule:: jitr.folding.jlm
:members:
```
1 change: 1 addition & 0 deletions docs/api/index.md
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:titlesonly:

core
folding
reactions
optical-potentials
quadrature
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15 changes: 13 additions & 2 deletions docs/examples/index.md
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/examples/notebooks/quickstart
/examples/notebooks/reaction
/examples/notebooks/example_jlm
/examples/notebooks/builtin_omps_uq
/examples/notebooks/kduq_uq_demo
/examples/notebooks/local_omp_demo
/examples/notebooks/angular_reaction_xs
/examples/notebooks/tabulated_density_demo
/examples/notebooks/dispersive_optical_model
/examples/notebooks/mass_exploration
/examples/notebooks/chuq_kduq_comp
/examples/notebooks/volume_integrals
Expand All @@ -30,12 +33,20 @@

## Full "batteries included" example:

- [JLM and JLMB semi-microscopic optical-potentials](/examples/notebooks/example_jlm)
converts the original JLM example into a notebook and walks through folded
microscopic potentials, Lane trends, and tabulated self-energy usage.
- [Compare built-in uncertainty-quantified optical potentials](/examples/notebooks/builtin_omps_uq)
walks through posterior sampling, solver setup, and interval construction for several of the built-in uncertainty quantified optical potentials in `jitr`.
walks through posterior sampling, solver setup, and interval construction
for several of the built-in uncertainty quantified optical potentials in `jitr`.

## Other useful examples

- [UQ demo qith Koning-Delaroche potential](/examples/notebooks/kduq_uq_demo)
- [Tabulated density usage](/examples/notebooks/tabulated_density_demo)
shows how to grab the tabulated nuclear densities in `jitr`.
- [Dispersive optical model](/examples/notebooks/dispersive_optical_model)
shows how to use the built-in dispersive optical model in `jitr`
- [UQ demo with Koning-Delaroche potential](/examples/notebooks/kduq_uq_demo)
demos propagating the uncertainty of the built-in KDUQ interaction.
- [Optical potential interface](/examples/notebooks/local_omp_demo)
shows how to define a custom optical potential using a common interface, and how to use it in a calculation.
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