Issue 126: IRI-API#127

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davramov wants to merge 42 commits into

als-computing:mainfrom

davramov:iri_api

Commits on Apr 23, 2026

Initial commit for adding NERSC IRI-API support alongside SFAPI for job submission
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Adding an abstraction for _submit_job() and _wait_for_job() that use the correct mechanism based on IRI/SF-API
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moving NERSCLoginMethod(Enum) to the job_controller.py module
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Removed NERSCLoginMethod(Enum) from nersc.py. Created a temporary test flow for reconstruction to test job submission. In reconstruct(), replaced the SFAPI-specific job submission/polling code with…
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Updating pytests
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Updating multires() method to use the generic _submit_job() and _wait_for_job() helpers
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successfully ran reconstruction using the IRI-API
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removing token.py and moving the logic to get_globus_token.py
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moving get_globus_token.py to orchestration/globus/ to be used as a module
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Cleaning up nersc.py
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cleaning up old commented code
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Updating unit tests
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updating login script
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Rebasing and including segmentation flows as part of iri/sfapi abstraction
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commenting out petiole segmentation prune block for now, while testing
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Making reconstruction run as a task
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Making IRIAPI the default login method for now
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adjusting queue name and account
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Making the IRI job submission read sbatch settings
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Switching to debug queue/2 nodes for the IRI demo
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check globus token expiration before minting a new one. avoids race condition when submitting concurrent jobs
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Fixing IRIAPI bugs, also commenting out Globus transfers for now
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removing IRIAPI client ID from nersc.py, since it is only used in globus/get_globus_token.py
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Updating logger comments
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Commits on May 10, 2026

Adding frontend/prefect_runner.html
davramov
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Commits on May 12, 2026