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demos/aws/README: strip to run instructions only
Install and Test Suite3D
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demos/README: strip to run instructions only
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demos/aws: document only demo 01, the one demo actually run on EC2
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debugging_tips: intensity_thresh is the "I want more cells" knob
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debugging_tips: intensity_thresh is the "I want more cells" knob
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benchmarking/paper: quantify the double-counted MC; confirm the subse…
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benchmarking/paper: document that OnACID motion-corrects twice
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benchmarking/paper: fix the README against an actual end-to-end AWS r…
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benchmarking/paper: ship the paper speed-benchmark harness; fix .dock…
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debugging_tips: add intensity_thresh tuning section
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nonrigid 3D GPU: chunk apply step over time to avoid whole-batch alloc
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WIP: speed-run baseline (uncommitted edits snapshot)
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secondary correction now that xpad /ypad are already ints
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xpad as 0D int for numpy 2 bug fix
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demo etc
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visualization
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hotfix
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s
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ui updates
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show # cells in napari ui
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colorbug
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curation robust to missing files
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new ui, reformat params, job registry etc.
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refactor and integration of UI
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3d nonrigid
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