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馃挱
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204 followers · 60 following

Achievements

Achievement: YOLOAchievement: Starstruckx2

Achievements

Achievement: YOLOAchievement: Starstruckx2

Organizations

@SolvingLab @piai-lab

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Zaoqu-Liu/README.md

PhD Student 路 Chinese Academy of Medical Sciences & Peking Union Medical College

Google Scholar ORCID ResearchGate

Research Focus

Developing computational methods and AI systems for tumor microenvironment analysis, multi-omics integration, and biomedical knowledge discovery.

Featured Publications

Repository Journal Description
MOFS Nature Communications Multimodality Fusion Subtyping
IRLS Nature Communications Immune-Related lncRNA Signature
GINS eLife Gene Interaction Perturbation Network
AIDPS eLife AI-Derived Prognostic Signature
TimeCCI Cell Reports Temporal Cell-Cell Interaction
SurvivalML Cancer Letters ML Prognostic Modeling

Original Software

AI for Science

ScienceClaw 路 PubMedRAG 路 LitChain 路 GeneRAG 路 Aividence 路 BioKG-Builder 路 llmflow

Single-cell & Spatial Omics

NewCCI 路 scMetaLink 路 SVG

Biomarker & Utilities

BioEnricher 路 ggforge 路 EasyDNB 路 SafeMapper 路 OpenTargetsR 路 TIME

Enhanced Forks

30+ repositories with substantial modifications:

Cell-Cell Communication: liana 路 SpaTalk 路 nichenetr 路 multinichenetr 路 iTALK 路 Connectome 路 COMMOT 路 Chunk

Single-Cell Analysis: CellOracle 路 scGate 路 SCENT 路 scTenifoldKnk 路 scPAS 路 recall 路 scimilarity 路 SAMap

Spatial Transcriptomics: STRIDE 路 SpaGE 路 cytospace 路 fastCNV

CNV & Metabolism: SCEVAN 路 METAFlux 路 MAGIC

Trajectory & Dynamics: tradeSeq 路 Cepo 路 Refate

Multi-omics: LRAcluster 路 RGCCA 路 genekitr2 路 GSReg 路 ssgsea.GBM.classification

Others: OmnipathR 路 MultiK 路 SecAct

馃摟 liuzaoqu@163.com 路 馃搷 Guangzhou, China 路 馃挰 Discussions

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  1. SolvingLab/SLCPTAC SolvingLab/SLCPTAC Public

    Multi-Omics Analysis Toolkit for CPTAC Cancer Database

    R 1 1

  2. SolvingLab/SLTCGA SolvingLab/SLTCGA Public

    Multi-Omics Analysis Toolkit for TCGA Cancer Database

    R

  3. OpenTargetsR OpenTargetsR Public

    Enhanced R Interface for Open Targets Platform

    R 1