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MSstats shiny vs MSstats in R discrepancies

Status: Open.

#185 In Vitek-Lab/MSstatsShiny;

· martinsindelar0077-ui opened on Apr 8, 2026

Enable Protein Turnover for MSstatsShiny

Status: Open.

#179 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Mar 13, 2026

[E2E] Process PTM Dataset with Response Curves

Status: Open.

#170 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Feb 19, 2026

Use PeakArea vs NormalizedPeakArea vs FGMS1Quantity for all Spectronaut datasets

Status: Open.

#162 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Feb 19, 2026

Bioconductor Release 3.23 Chemoproteomics Updates

Status: Open.

#159 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Feb 19, 2026

column mapping issue for DIANN output files

Status: Open.

#157 In Vitek-Lab/MSstatsShiny;

· mhmd-tarek opened on Feb 19, 2026

Add ProteinProspectorToMSstatsPTM Function to MSstatsShiny

Status: Open.

#149 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Jan 13, 2026

Add ProteinProspectorToMSstatsTMTFormat Function to MSstatsShiny

Status: Open.

#147 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Jan 13, 2026

Integrate new converters to MSstatsShiny

Status: Open.

#146 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Jan 13, 2026

Infer run order based on R.Run Date for Spectronaut MSstats+

Status: Open.

#141 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Dec 9, 2025

MSstatsformat option cannot upload for Protein/peptide

Status: Open.

#113 In Vitek-Lab/MSstatsShiny;

· tonywu1999 opened on Aug 27, 2025

ms stats shiny wont read annotation file for processing of fragpipe output

Status: Open.

#107 In Vitek-Lab/MSstatsShiny;

· johnkollias opened on May 27, 2025