chore(deps): bump the all-dependencies group across 1 directory with 7 updates by dependabot[bot] · Pull Request #235 · USTC-KnowledgeComputingLab/qmp-kit

dependabot · 2026-06-17T15:18:00Z

Bumps the all-dependencies group with 7 updates in the / directory:

Package	From	To
platformdirs	`4.9.6`	`4.10.0`
numpy	`2.4.4`	`2.4.6`
hydra-core	`1.3.2`	`1.3.3`
pyscf	`2.13.0`	`2.13.1`
pytest	`9.0.3`	`9.1.0`
ruff	`0.15.12`	`0.15.17`
types-pyyaml	`6.0.12.20260510`	`6.0.12.20260518`

Updates platformdirs from 4.9.6 to 4.10.0

Release notes

Sourced from platformdirs's releases.

4.10.0

What's Changed

chore: improve platformdirs maintenance path by @lphuc2250gma in tox-dev/platformdirs#488

✨ feat: add user_projects_dir for $XDG_PROJECTS_DIR by @gaborbernat in tox-dev/platformdirs#490

✨ feat: add user_publicshare_dir, user_templates_dir, user_fonts_dir, user_preference_dir by @gaborbernat in tox-dev/platformdirs#491

New Contributors

@lphuc2250gma made their first contribution in tox-dev/platformdirs#488

Full Changelog: tox-dev/platformdirs@4.9.6...4.10.0

Changelog

Sourced from platformdirs's changelog.

########### Changelog ###########

4.10.0 (2026-05-28)

✨ feat: add user_publicshare_dir, user_templates_dir, user_fonts_dir, user_preference_dir :pr:491

✨ feat: add user_projects_dir for $XDG_PROJECTS_DIR :pr:490

chore: improve platformdirs maintenance path :pr:488 - by :user:lphuc2250gma

4.9.6 (2026-04-09)

🐛 fix(release): use double quotes for tag variable expansion :pr:477

4.9.5 (2026-04-06)

📝 docs(appauthor): clarify None vs False on Windows :pr:476

Separates implementations of macOS dirs that share a default :pr:473 - by :user:Goddesen

Remove persist-credentials: false from release job :pr:472

fix: do not duplicate site dirs in Unix.iter_{config,site}_dirs() when use_site_for_root is active :pr:469 - by :user:viccie30

🔧 fix(type): resolve ty 0.0.25 type errors :pr:468

🔒 ci(workflows): add zizmor security auditing :pr:467

🐛 fix(release): generate docstrfmt-compatible changelog entries :pr:463

4.9.4 (2026-03-05)

[pre-commit.ci] pre-commit autoupdate :pr:461 - by :user:pre-commit-ci[bot]

Update README.md

📝 docs: add project logo to documentation :pr:459

Standardize .github files to .yaml suffix

build(deps): bump the all group with 2 updates :pr:457 - by :user:dependabot[bot]

Move SECURITY.md to .github/SECURITY.md

Add permissions to workflows :pr:455

Add security policy

[pre-commit.ci] pre-commit autoupdate :pr:454 - by :user:pre-commit-ci[bot]

4.9.2 (2026-02-16)

📝 docs: restructure following Diataxis framework :pr:448

... (truncated)

Commits

04cb136 Release 4.10.0
078bc61 ✨ feat: add user_publicshare_dir, user_templates_dir, user_fonts_dir, user_pr...
d279747 ✨ feat: add user_projects_dir for $XDG_PROJECTS_DIR (#490)
4116391 [pre-commit.ci] pre-commit autoupdate (#489)
dbc63f5 chore: improve platformdirs maintenance path (#488)
9265108 [pre-commit.ci] pre-commit autoupdate (#487)
9f857ec [pre-commit.ci] pre-commit autoupdate (#486)
a76e777 [pre-commit.ci] pre-commit autoupdate (#484)
903fd9f [pre-commit.ci] pre-commit autoupdate (#483)
a5da35d build(deps): bump astral-sh/setup-uv from 8.0.0 to 8.1.0 in the all group (#482)
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Updates numpy from 2.4.4 to 2.4.6

Release notes

Sourced from numpy's releases.

v2.4.6 (May 18, 2026)

NumPy 2.4.6 Release Notes

NumPy 2.4.6 is a quick release that fixes a regression discovered in the 2.4.5 release.

This release supports Python versions 3.11-3.14

Contributors

A total of 4 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

!EarlMilktea

Charles Harris

Sebastian Berg

Warren Weckesser

Pull requests merged

A total of 4 pull requests were merged for this release.

#31444: MAINT: Prepare 2.4.x for further development

#31453: BUG: Fix regression in arr.conj()

#31459: BUG: np.linalg.svd(..., hermitian=True) returns non-unitary...

#31460: BUG: Don't call INCREF/DECREF on descr in NpyStringAcquireAllocator...

v2.4.5 (May 15, 2026)

NumPy 2.4.5 Release Notes

NumPy 2.4.5 is a patch release that fixes bugs discovered after the 2.4.4 release, has some typing improvements, and maintains infrastructure.

This release supports Python versions 3.11-3.14

Contributors

A total of 17 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

Aleksei Nikiforov

Anarion Zuo +

Ankit Ahlawat

Breno Favaretto +

Charles Harris

Igor Krivenko +

Ijtihed Kilani +

Joren Hammudoglu

Maarten Baert +

... (truncated)

Commits

b832a09 Merge pull request #31462 from charris/prepare-2.4.6
57cc147 REL: Prepare for the NumPy 2.4.6 release
0c72b0b Merge pull request #31459 from charris/backport-31347
9778d26 BUG: core: Don't call INCREF/DECREF on descr in NpyStringAcquireAllocator. (#...
e0e3876 BUG: core: Don't call INCREF/DECREF on descr in NpyStringAcquireAllocator. (#...
d1bffeb BUG: np.linalg.svd(..., hermitian=True) returns non-unitary vh (#31347)
8d8d7e5 Merge pull request #31453 from seberg/issue-31452
bddaab7 BUG: Fix regression in arr.conj()
37a1ecc Merge pull request #31444 from charris/begin-2.4.6
3c0e043 MAINT: Prepare 2.4.x for further development
Additional commits viewable in compare view

Updates hydra-core from 1.3.2 to 1.3.3

Release notes

Sourced from hydra-core's releases.

Hydra 1.3.3 fixes source builds with modern setuptools by removing the setup.py dependency on pkg_resources. Fixes #3207.

Changelog

Sourced from hydra-core's changelog.

1.3.3 (2026-06-11)

Bug Fixes

Remove the setup.py dependency on pkg_resources for source builds. (#3207)

Commits

d69214b Add 1.3 branch PyPI publish workflow
e67cae3 Prepare Hydra 1.3.3 release
f8d6111 Fix source builds without pkg_resources
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Updates pyscf from 2.13.0 to 2.13.1

Release notes

Sourced from pyscf's releases.

PySCF v2.13.1 release

Fixes

Missing CP2K basis set data in wheel distributions

Small-rotor error.

Corrected SG1 grid radii handling for ghost atoms.

Fixed ECP loading to correctly fall back to Basis Set Exchange when local data is unavailable.

Changelog

Sourced from pyscf's changelog.

PySCF 2.13.1 (2026-06-01)

Fixes

Missing CP2K basis set data in wheel distributions

Small-rotor error.

Corrected SG1 grid radii handling for ghost atoms.

Fixed ECP loading to correctly fall back to Basis Set Exchange when local data is unavailable.

Commits

f3754ed Release 2.13.1 (#3232)
6badca8 fix cp2k basis missing bug
9fc6f99 Fix a batch of C-side correctness bugs across pbc, gto, vhf, dft, mcscf, ao2m...
f9ecb25 handle stderr on win
c744d50 upgrade dispersion (#3209)
60cd902 Correctly fallback to loading ECP from basis-set-exchange
db2ec05 Better SG1 radii parameter for ghost atom
45809ec Merge pull request #3205 from fchapoton/details_in_tools
20f12bc a few minor code simplifications and formatting in pyscf/tools
2f85ea3 Merge pull request #3201 from fchapoton/code_detail_in_geom
Additional commits viewable in compare view

Updates pytest from 9.0.3 to 9.1.0

Release notes

Sourced from pytest's releases.

9.1.0

pytest 9.1.0 (2026-06-13)

Removals and backward incompatible breaking changes

#14533: When using --doctest-modules, autouse fixtures with module, package or session scope that are defined inline in Python test modules (not plugins or conftests) will now possibly execute twice.

If this is undesirable, move the fixture definition to a conftest.py file if possible.

Technical explanation for those interested: When using --doctest-modules, pytest possibly collects Python modules twice, once as pytest.Module and once as a DoctestModule (depending on the configuration). Due to improvements in pytest's fixture implementation, if e.g. the DoctestModule collects a fixture, it is now visible to it only, and not to the Module. This means that both need to register the fixtures independently.

Deprecations (removal in next major release)

#10819: Added a deprecation warning for class-scoped fixtures defined as instance methods (without @classmethod). Such fixtures set attributes on a different instance than the test methods use, leading to unexpected behavior. Use @classmethod decorator instead -- by yastcher.

See 10819 and 14011.

#12882: Calling request.getfixturevalue() <pytest.FixtureRequest.getfixturevalue> during teardown to request a fixture that was not already requested is now deprecated and will become an error in pytest 10.

See dynamic-fixture-request-during-teardown for details.

#13409: Using non-~collections.abc.Collection iterables (such as generators, iterators, or custom iterable objects) for the argvalues parameter in @pytest.mark.parametrize <pytest.mark.parametrize ref> and metafunc.parametrize <pytest.Metafunc.parametrize> is now deprecated.

These iterables get exhausted after the first iteration, leading to tests getting unexpectedly skipped in cases such as running pytest.main() multiple times, using class-level parametrize decorators, or collecting tests multiple times.

See parametrize-iterators for details and suggestions.

#13946: The private config.inicfg attribute is now deprecated. Use config.getini() <pytest.Config.getini> to access configuration values instead.

See config-inicfg for more details.

#14004: Passing baseid to ~pytest.FixtureDef or nodeid strings to fixture registration APIs is now deprecated. These are internal pytest APIs that are used by some plugins.

Use the node parameter instead for fixture scoping. This enables more robust node-based matching instead of string prefix matching. If you've used nodeid=None, pass node=session instead.

This will be removed in pytest 10.

#14335: The method of configuring hooks using markers, deprecated since pytest 7.2, is now scheduled to be removed in pytest 10. See hook-markers for more details.

#14434: The --pastebin option is now deprecated.

... (truncated)

Commits

b2522cf Prepare release version 9.1.0
368d2fc [refactor] Tighten SetComparisonFunction to Iterator[str] (#14587)
ff77cd8 [refactor] Make base assertion comparisons return an iterator instead of a li...
0d8491a build(deps): Bump actions/stale from 10.2.0 to 10.3.0
4a809d9 Merge pull request #14568 from pytest-dev/register-fixture
5dfa385 Fix recursion traceback test to cover all styles (#14582)
f52ff0c Add pytest.register_fixture
a8ac094 Merge pull request #14567 from pytest-dev/more-visibility-deprecate
e5620cd [pre-commit.ci] pre-commit autoupdate (#14577)
2ce9c6d Merge pull request #14540 from minbang930/fix-14533-doctest-module-fixtures
Additional commits viewable in compare view

Updates ruff from 0.15.12 to 0.15.17

Release notes

Sourced from ruff's releases.

0.15.17

Release Notes

Released on 2026-06-11.

Preview features

Allow human-readable names in suppression comments (#25614)

Fix handling of ignore comments within a disable/enable pair (#25845)

Prioritize human-readable names in CLI output (#25869)

Respect diagnostic start and parent ranges and trailing comments in ruff:ignore suppressions (#25673)

[flake8-async] Add trio.as_safe_channel to safe decorators (ASYNC119) (#25775)

[flake8-pytest-style] Also check pytest_asyncio fixtures (#25375)

[ruff] Ban pytest autouse fixtures (RUF076) (#25477)

[pyupgrade] Add from __future__ import annotations automatically (UP007, UP045) (#23259)

Bug fixes

Fix diagnostic when ruff:enable or ruff:disable appears where ruff:ignore is expected (#25700)

[pyupgrade] Preserve leading empty literals to avoid syntax errors (UP032) (#25491)

Rule changes

[flake8-pytest-style] Clarify diagnostic message for single parameters (PT007) (#25592)

[numpy] Drop autofix for np.in1d (NPY201) (#25612)

[pylint] Exempt Python version comparisons (PLR2004) (#25743)

Performance

Reserve AST Vecs with correct capacity for common cases (#25451)

Formatter

Preserve whitespace for Quarto cell option comments (#25641)

CLI

Allow rule names in ruff rule (#25640)

Other changes

Fix playground diagnostics scrollbars (#25642)

Contributors

@SuryanshSS1011

@anishgirianish

@romero-deshaw

@karlhillx

@carljm

... (truncated)

Changelog

Sourced from ruff's changelog.

0.15.17

Released on 2026-06-11.

Preview features

Allow human-readable names in suppression comments (#25614)

Fix handling of ignore comments within a disable/enable pair (#25845)

Prioritize human-readable names in CLI output (#25869)

Respect diagnostic start and parent ranges and trailing comments in ruff:ignore suppressions (#25673)

[flake8-async] Add trio.as_safe_channel to safe decorators (ASYNC119) (#25775)

[flake8-pytest-style] Also check pytest_asyncio fixtures (#25375)

[ruff] Ban pytest autouse fixtures (RUF076) (#25477)

[pyupgrade] Add from __future__ import annotations automatically (UP007, UP045) (#23259)

Bug fixes

Fix diagnostic when ruff:enable or ruff:disable appears where ruff:ignore is expected (#25700)

[pyupgrade] Preserve leading empty literals to avoid syntax errors (UP032) (#25491)

Rule changes

[flake8-pytest-style] Clarify diagnostic message for single parameters (PT007) (#25592)

[numpy] Drop autofix for np.in1d (NPY201) (#25612)

[pylint] Exempt Python version comparisons (PLR2004) (#25743)

Performance

Reserve AST Vecs with correct capacity for common cases (#25451)

Formatter

Preserve whitespace for Quarto cell option comments (#25641)

CLI

Allow rule names in ruff rule (#25640)

Other changes

Fix playground diagnostics scrollbars (#25642)

Contributors

@SuryanshSS1011

@anishgirianish

@romero-deshaw

@karlhillx

@carljm

@ntBre

... (truncated)

Commits

7c645a9 Bump 0.15.17 (#25872)
f381eb1 Prioritize human-readable names in CLI output (#25869)
b9b4546 Minor workflow simplification (#25870)
1e77ba0 [ty] Move PreformattedBlockScanner to format-agnostic location. (#25856)
6f2b772 [ty] Preserve nominal type of enum.property instances (#25849)
be4777c [ty] Fix site-package error when multiple versions of pythons are installed i...
53f6ff7 Allow human-readable names in suppression comments (#25614)
6740325 [ty] Restrict uncached raw signature access (#25866)
970b1bf Auto-update snapshots when syncing typeshed (#25841)
0785793 Fix handling of ignore comments within a disable/enable pair (#25845)
Additional commits viewable in compare view

Updates types-pyyaml from 6.0.12.20260510 to 6.0.12.20260518

Commits

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…7 updates Bumps the all-dependencies group with 7 updates in the / directory: | Package | From | To | | --- | --- | --- | | [platformdirs](https://github.com/tox-dev/platformdirs) | `4.9.6` | `4.10.0` | | [numpy](https://github.com/numpy/numpy) | `2.4.4` | `2.4.6` | | [hydra-core](https://github.com/facebookresearch/hydra) | `1.3.2` | `1.3.3` | | [pyscf](https://github.com/pyscf/pyscf) | `2.13.0` | `2.13.1` | | [pytest](https://github.com/pytest-dev/pytest) | `9.0.3` | `9.1.0` | | [ruff](https://github.com/astral-sh/ruff) | `0.15.12` | `0.15.17` | | [types-pyyaml](https://github.com/python/typeshed) | `6.0.12.20260510` | `6.0.12.20260518` | Updates `platformdirs` from 4.9.6 to 4.10.0 - [Release notes](https://github.com/tox-dev/platformdirs/releases) - [Changelog](https://github.com/tox-dev/platformdirs/blob/main/docs/changelog.rst) - [Commits](tox-dev/platformdirs@4.9.6...4.10.0) Updates `numpy` from 2.4.4 to 2.4.6 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](numpy/numpy@v2.4.4...v2.4.6) Updates `hydra-core` from 1.3.2 to 1.3.3 - [Release notes](https://github.com/facebookresearch/hydra/releases) - [Changelog](https://github.com/facebookresearch/hydra/blob/v1.3.3/NEWS.md) - [Commits](facebookresearch/hydra@v1.3.2...v1.3.3) Updates `pyscf` from 2.13.0 to 2.13.1 - [Release notes](https://github.com/pyscf/pyscf/releases) - [Changelog](https://github.com/pyscf/pyscf/blob/master/CHANGELOG) - [Commits](pyscf/pyscf@v2.13.0...v2.13.1) Updates `pytest` from 9.0.3 to 9.1.0 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](pytest-dev/pytest@9.0.3...9.1.0) Updates `ruff` from 0.15.12 to 0.15.17 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.15.12...0.15.17) Updates `types-pyyaml` from 6.0.12.20260510 to 6.0.12.20260518 - [Commits](https://github.com/python/typeshed/commits) --- updated-dependencies: - dependency-name: platformdirs dependency-version: 4.10.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: numpy dependency-version: 2.4.6 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: hydra-core dependency-version: 1.3.3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: pyscf dependency-version: 2.13.1 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: pytest dependency-version: 9.1.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: ruff dependency-version: 0.15.17 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: types-pyyaml dependency-version: 6.0.12.20260518 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: all-dependencies ... Signed-off-by: dependabot[bot] <support@github.com>

dependabot · 2026-06-24T15:14:46Z

Looks like these dependencies are updatable in another way, so this is no longer needed.

dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Jun 17, 2026

dependabot Bot closed this Jun 24, 2026

dependabot Bot deleted the dependabot/uv/all-dependencies-f8db2fc258 branch June 24, 2026 15:14

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chore(deps): bump the all-dependencies group across 1 directory with 7 updates - #235

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4.10.0

What's Changed

New Contributors

v2.4.6 (May 18, 2026)

NumPy 2.4.6 Release Notes

Contributors

Pull requests merged

v2.4.5 (May 15, 2026)

NumPy 2.4.5 Release Notes

Contributors

1.3.3 (2026-06-11)

Bug Fixes

PySCF v2.13.1 release

PySCF 2.13.1 (2026-06-01)

9.1.0

pytest 9.1.0 (2026-06-13)

Removals and backward incompatible breaking changes

Deprecations (removal in next major release)

0.15.17

Release Notes

Preview features

Bug fixes

Rule changes

Performance

Formatter

CLI

Other changes

Contributors

0.15.17

Preview features

Bug fixes

Rule changes

Performance

Formatter

CLI

Other changes

Contributors

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