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chore(deps): bump the all-dependencies group across 1 directory with 5 updates - #234

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chore(deps): bump the all-dependencies group across 1 directory with 5 updates#234
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@dependabot dependabot Bot commented on behalf of github Jun 4, 2026

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Bumps the all-dependencies group with 5 updates in the / directory:

Package From To
platformdirs 4.9.6 4.10.0
numpy 2.4.4 2.4.6
pyscf 2.13.0 2.13.1
ruff 0.15.12 0.15.15
types-pyyaml 6.0.12.20260510 6.0.12.20260518

Updates platformdirs from 4.9.6 to 4.10.0

Release notes

Sourced from platformdirs's releases.

4.10.0

What's Changed

New Contributors

Full Changelog: tox-dev/platformdirs@4.9.6...4.10.0

Changelog

Sourced from platformdirs's changelog.

########### Changelog ###########


4.10.0 (2026-05-28)


  • ✨ feat: add user_publicshare_dir, user_templates_dir, user_fonts_dir, user_preference_dir :pr:491
  • ✨ feat: add user_projects_dir for $XDG_PROJECTS_DIR :pr:490
  • chore: improve platformdirs maintenance path :pr:488 - by :user:lphuc2250gma

4.9.6 (2026-04-09)


  • 🐛 fix(release): use double quotes for tag variable expansion :pr:477

4.9.5 (2026-04-06)


  • 📝 docs(appauthor): clarify None vs False on Windows :pr:476
  • Separates implementations of macOS dirs that share a default :pr:473 - by :user:Goddesen
  • Remove persist-credentials: false from release job :pr:472
  • fix: do not duplicate site dirs in Unix.iter_{config,site}_dirs() when use_site_for_root is active :pr:469 - by :user:viccie30
  • 🔧 fix(type): resolve ty 0.0.25 type errors :pr:468
  • 🔒 ci(workflows): add zizmor security auditing :pr:467
  • 🐛 fix(release): generate docstrfmt-compatible changelog entries :pr:463

4.9.4 (2026-03-05)


  • [pre-commit.ci] pre-commit autoupdate :pr:461 - by :user:pre-commit-ci[bot]
  • Update README.md
  • 📝 docs: add project logo to documentation :pr:459
  • Standardize .github files to .yaml suffix
  • build(deps): bump the all group with 2 updates :pr:457 - by :user:dependabot[bot]
  • Move SECURITY.md to .github/SECURITY.md
  • Add permissions to workflows :pr:455
  • Add security policy
  • [pre-commit.ci] pre-commit autoupdate :pr:454 - by :user:pre-commit-ci[bot]

4.9.2 (2026-02-16)


  • 📝 docs: restructure following Diataxis framework :pr:448

... (truncated)

Commits
  • 04cb136 Release 4.10.0
  • 078bc61 ✨ feat: add user_publicshare_dir, user_templates_dir, user_fonts_dir, user_pr...
  • d279747 ✨ feat: add user_projects_dir for $XDG_PROJECTS_DIR (#490)
  • 4116391 [pre-commit.ci] pre-commit autoupdate (#489)
  • dbc63f5 chore: improve platformdirs maintenance path (#488)
  • 9265108 [pre-commit.ci] pre-commit autoupdate (#487)
  • 9f857ec [pre-commit.ci] pre-commit autoupdate (#486)
  • a76e777 [pre-commit.ci] pre-commit autoupdate (#484)
  • 903fd9f [pre-commit.ci] pre-commit autoupdate (#483)
  • a5da35d build(deps): bump astral-sh/setup-uv from 8.0.0 to 8.1.0 in the all group (#482)
  • Additional commits viewable in compare view

Updates numpy from 2.4.4 to 2.4.6

Release notes

Sourced from numpy's releases.

v2.4.6 (May 18, 2026)

NumPy 2.4.6 Release Notes

NumPy 2.4.6 is a quick release that fixes a regression discovered in the 2.4.5 release.

This release supports Python versions 3.11-3.14

Contributors

A total of 4 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • !EarlMilktea
  • Charles Harris
  • Sebastian Berg
  • Warren Weckesser

Pull requests merged

A total of 4 pull requests were merged for this release.

  • #31444: MAINT: Prepare 2.4.x for further development
  • #31453: BUG: Fix regression in arr.conj()
  • #31459: BUG: np.linalg.svd(..., hermitian=True) returns non-unitary...
  • #31460: BUG: Don't call INCREF/DECREF on descr in NpyStringAcquireAllocator...

v2.4.5 (May 15, 2026)

NumPy 2.4.5 Release Notes

NumPy 2.4.5 is a patch release that fixes bugs discovered after the 2.4.4 release, has some typing improvements, and maintains infrastructure.

This release supports Python versions 3.11-3.14

Contributors

A total of 17 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Aleksei Nikiforov
  • Anarion Zuo +
  • Ankit Ahlawat
  • Breno Favaretto +
  • Charles Harris
  • Igor Krivenko +
  • Ijtihed Kilani +
  • Joren Hammudoglu
  • Maarten Baert +

... (truncated)

Commits
  • b832a09 Merge pull request #31462 from charris/prepare-2.4.6
  • 57cc147 REL: Prepare for the NumPy 2.4.6 release
  • 0c72b0b Merge pull request #31459 from charris/backport-31347
  • 9778d26 BUG: core: Don't call INCREF/DECREF on descr in NpyStringAcquireAllocator. (#...
  • e0e3876 BUG: core: Don't call INCREF/DECREF on descr in NpyStringAcquireAllocator. (#...
  • d1bffeb BUG: np.linalg.svd(..., hermitian=True) returns non-unitary vh (#31347)
  • 8d8d7e5 Merge pull request #31453 from seberg/issue-31452
  • bddaab7 BUG: Fix regression in arr.conj()
  • 37a1ecc Merge pull request #31444 from charris/begin-2.4.6
  • 3c0e043 MAINT: Prepare 2.4.x for further development
  • Additional commits viewable in compare view

Updates pyscf from 2.13.0 to 2.13.1

Release notes

Sourced from pyscf's releases.

PySCF v2.13.1 release

  • Fixes
    • Missing CP2K basis set data in wheel distributions
    • Small-rotor error.
    • Corrected SG1 grid radii handling for ghost atoms.
    • Fixed ECP loading to correctly fall back to Basis Set Exchange when local data is unavailable.
Changelog

Sourced from pyscf's changelog.

PySCF 2.13.1 (2026-06-01)

  • Fixes
    • Missing CP2K basis set data in wheel distributions
    • Small-rotor error.
    • Corrected SG1 grid radii handling for ghost atoms.
    • Fixed ECP loading to correctly fall back to Basis Set Exchange when local data is unavailable.
Commits
  • f3754ed Release 2.13.1 (#3232)
  • 6badca8 fix cp2k basis missing bug
  • 9fc6f99 Fix a batch of C-side correctness bugs across pbc, gto, vhf, dft, mcscf, ao2m...
  • f9ecb25 handle stderr on win
  • c744d50 upgrade dispersion (#3209)
  • 60cd902 Correctly fallback to loading ECP from basis-set-exchange
  • db2ec05 Better SG1 radii parameter for ghost atom
  • 45809ec Merge pull request #3205 from fchapoton/details_in_tools
  • 20f12bc a few minor code simplifications and formatting in pyscf/tools
  • 2f85ea3 Merge pull request #3201 from fchapoton/code_detail_in_geom
  • Additional commits viewable in compare view

Updates ruff from 0.15.12 to 0.15.15

Release notes

Sourced from ruff's releases.

0.15.15

Release Notes

Released on 2026-05-28.

Preview features

  • Fix Markdown closing fence handling (#25310)
  • [pyflakes] Report duplicate imports in typing.TYPE_CHECKING block (F811) (#22560)

Bug fixes

  • [pyflakes] Treat function-scope bare annotations as locals per PEP 526 (F821) (#21540)

Performance

  • Avoid redundant TokenValue drops in the lexer (#25300)
  • Reduce memory usage by dropping token-excess capacity and improve performance by approximating the initial tokens Vec size (#25354)
  • Use ThinVec in AST to shrink Stmt (#25361)

Documentation

  • Fix line-length example for --config option (#25389)
  • [flake8-comprehensions] Document RecursionError edge case in __len__ (C416) (#25286)
  • [mccabe] Improve example (C901) (#25287)
  • [pyupgrade] Clarify fix safety docs (UP007, UP045) (#25288)
  • [refurb] Document FURB192 exception change for empty sequences (#25317)
  • [ruff] Document false negative for user-defined types (RUF013) (#25289)

Formatter

  • Fix formatting of lambdas nested within f-strings (#25398)

Server

  • Return code action for codeAction/resolve requests that contain no or no valid URL (#25365)

Other changes

  • Expand semantic syntax errors for invalid walruses (#25415)

Contributors

... (truncated)

Changelog

Sourced from ruff's changelog.

0.15.15

Released on 2026-05-28.

Preview features

  • Fix Markdown closing fence handling (#25310)
  • [pyflakes] Report duplicate imports in typing.TYPE_CHECKING block (F811) (#22560)

Bug fixes

  • [pyflakes] Treat function-scope bare annotations as locals per PEP 526 (F821) (#21540)

Performance

  • Avoid redundant TokenValue drops in the lexer (#25300)
  • Reduce memory usage by dropping token-excess capacity and improve performance by approximating the initial tokens Vec size (#25354)
  • Use ThinVec in AST to shrink Stmt (#25361)

Documentation

  • Fix line-length example for --config option (#25389)
  • [flake8-comprehensions] Document RecursionError edge case in __len__ (C416) (#25286)
  • [mccabe] Improve example (C901) (#25287)
  • [pyupgrade] Clarify fix safety docs (UP007, UP045) (#25288)
  • [refurb] Document FURB192 exception change for empty sequences (#25317)
  • [ruff] Document false negative for user-defined types (RUF013) (#25289)

Formatter

  • Fix formatting of lambdas nested within f-strings (#25398)

Server

  • Return code action for codeAction/resolve requests that contain no or no valid URL (#25365)

Other changes

  • Expand semantic syntax errors for invalid walruses (#25415)

Contributors

... (truncated)

Commits
  • db5aa0a Bump 0.15.15 (#25431)
  • 366fe21 [ty] Improve diagnostics for syntax errors in forward annotations (#25158)
  • e2e1e64 [ty] Remove excess capacity from more Salsa cached collections (#25411)
  • 1bd77e1 [ty] Use diagnostic message as tie breaker when sorting (#25424)
  • 7e1bc1e Add agent skills for working on ty (#25422)
  • 574e107 Expand semantic syntax errors for invalid walruses (#25415)
  • 4a7ca06 [ty] Display docs for matching parameter when hovering over the name of an ar...
  • 5432709 Refine a few agents instructions (#25423)
  • 3cb09eb [ty] Support typing.TypeForm (#25334)
  • c8cd59f [ty] Infer class attributes assigned by metaclass initialization (#25342)
  • Additional commits viewable in compare view

Updates types-pyyaml from 6.0.12.20260510 to 6.0.12.20260518

Commits

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…5 updates

Bumps the all-dependencies group with 5 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [platformdirs](https://github.com/tox-dev/platformdirs) | `4.9.6` | `4.10.0` |
| [numpy](https://github.com/numpy/numpy) | `2.4.4` | `2.4.6` |
| [pyscf](https://github.com/pyscf/pyscf) | `2.13.0` | `2.13.1` |
| [ruff](https://github.com/astral-sh/ruff) | `0.15.12` | `0.15.15` |
| [types-pyyaml](https://github.com/python/typeshed) | `6.0.12.20260510` | `6.0.12.20260518` |



Updates `platformdirs` from 4.9.6 to 4.10.0
- [Release notes](https://github.com/tox-dev/platformdirs/releases)
- [Changelog](https://github.com/tox-dev/platformdirs/blob/main/docs/changelog.rst)
- [Commits](tox-dev/platformdirs@4.9.6...4.10.0)

Updates `numpy` from 2.4.4 to 2.4.6
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.4.4...v2.4.6)

Updates `pyscf` from 2.13.0 to 2.13.1
- [Release notes](https://github.com/pyscf/pyscf/releases)
- [Changelog](https://github.com/pyscf/pyscf/blob/master/CHANGELOG)
- [Commits](pyscf/pyscf@v2.13.0...v2.13.1)

Updates `ruff` from 0.15.12 to 0.15.15
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.15.12...0.15.15)

Updates `types-pyyaml` from 6.0.12.20260510 to 6.0.12.20260518
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: platformdirs
  dependency-version: 4.10.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: numpy
  dependency-version: 2.4.6
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: pyscf
  dependency-version: 2.13.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: ruff
  dependency-version: 0.15.15
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
- dependency-name: types-pyyaml
  dependency-version: 6.0.12.20260518
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Jun 4, 2026
@dependabot @github

dependabot Bot commented on behalf of github Jun 17, 2026

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Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot Bot closed this Jun 17, 2026
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dependabot Bot deleted the dependabot/uv/all-dependencies-7a7a8a642e branch June 17, 2026 15:17
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