Update CLI integration coverage and version sync for the SDK split

[TrueNine]

Summary

• add container-backed cli-integration-test coverage for Codex and Claude Code flows, including stricter Codex command assertions against global ~/.codex/prompts
• update PR CI to run CLI integration tests explicitly and avoid duplicating them in the general test job
• sync version propagation and git hook coverage so cli-integration-test/package.json participates in CalVer updates
• align package, Cargo, and Tauri versions across the workspace after the SDK/CLI packaging changes
• refresh CLI, SDK, native binding, and docs surfaces to match the current SDK-owned architecture

Testing

• pnpm exec vitest run .githooks/sync-versions.test.ts
• pnpm exec vitest run src/adaptors/CodexCLIOutputAdaptor.test.ts
• pnpm -C cli-integration-test run test:codex