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Optimize graph building#111

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MustafaIsmail10 wants to merge 7 commits intoTestingResearchIllinois:mixed-granularityfrom
mmk-1:optimize-graph-building
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Optimize graph building#111
MustafaIsmail10 wants to merge 7 commits intoTestingResearchIllinois:mixed-granularityfrom
mmk-1:optimize-graph-building

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This PR includes the following optimizations for method level and hybrid analysis graph-building functionality
For Method analysis:
Instead of rebuilding the method-level dependency graph from scratch each time, it stores the graph in the first run. In the subsequent runs, It reads the graph and updates it with the changes. Then, it uses the new graph for computations. At the end, it stores the updated graph.

For Hybrid analysis:
It is similar to method-level analysis. In addition, it uses the method-level graph to build the class-level dependency graph.

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