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iQTL interaction factors center

Status: Open.

#1276 In StatFunGen/xqtl-protocol;

· gaow opened on Dec 4, 2025

TWAS/cTWAS codes needs to support dropping event patterns

Status: Open.

#1160 In StatFunGen/xqtl-protocol;

· gaow opened on Mar 25, 2025

rare events detection in impution pipeline

Status: Open.

#1073 In StatFunGen/xqtl-protocol;

· rfeng2023 opened on Sep 24, 2024

bug in TensorQTL for sQTL analysis

Status: Open.

#1072 In StatFunGen/xqtl-protocol;

· rfeng2023 opened on Sep 24, 2024

pipeline/extract_effects.ipynb file not found

Status: Open.

#1024 In StatFunGen/xqtl-protocol;

· neeteshpandey opened on Aug 2, 2024

error in association analysis

Status: Open.

#985 In StatFunGen/xqtl-protocol;

· rfeng2023 opened on Apr 27, 2024

Gene annotation should also generate relevant files for --phenoIDFile

Status: Open.

#942 In StatFunGen/xqtl-protocol;

· gaow opened on Mar 26, 2024

Some reference data download link nolonger work, pending investigation.

Status: Open.

#758 In StatFunGen/xqtl-protocol;

· hsun3163 opened on Dec 1, 2023

RNA_calling.ipynb rsem_call error when using BAM files from STAR with wasp filter

Status: Open.

#696 In StatFunGen/xqtl-protocol;

· grennfp opened on Oct 5, 2023

Error message - BAM file shares no contigs with GTF - Knight eQTL rnaseq call

Status: Open.

#571 In StatFunGen/xqtl-protocol;

· Chunmingl opened on Apr 20, 2023

* in snp is not allowed in MASH pipeline rds_to_vcf

Status: Open.

#551 In StatFunGen/xqtl-protocol;

· rfeng2023 opened on Mar 13, 2023

How to deal with NA column in MASH analysis

Status: Open.

#550 In StatFunGen/xqtl-protocol;

· rfeng2023 opened on Mar 13, 2023