pipeline fixes

[danielnachun]

No description provided.

[codecov]

Codecov Report

❌ Patch coverage is 86.32479% with 96 lines in your changes missing coverage. Please review.
✅ Project coverage is 85.62%. Comparing base (832c667) to head (e0bf253).
⚠️ Report is 5 commits behind head on main.

Files with missing lines	Patch %	Lines
R/sumstatsQc.R	81.85%	41 Missing ⚠️
R/ctwasPipeline.R	91.44%	32 Missing ⚠️
R/tupleSelectors.R	56.25%	7 Missing ⚠️
R/colocPipeline.R	14.28%	6 Missing ⚠️
R/qtlEnrichmentPipeline.R	80.95%	4 Missing ⚠️
R/GwasFineMappingResult.R	90.90%	2 Missing ⚠️
R/fineMappingPipeline.R	93.10%	2 Missing ⚠️
R/genotypeIo.R	71.42%	2 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #525      +/-   ##
==========================================
+ Coverage   83.70%   85.62%   +1.91%     
==========================================
  Files          51       54       +3     
  Lines       13007    14640    +1633     
==========================================
+ Hits        10888    12535    +1647     
+ Misses       2119     2105      -14     

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