Myloasm stefanfixes#2
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* actions: test-aviary: Attempt fix. * actions: test-aviary: Attempt fix 2.
This was meant to be merged ages ago but didn't happen for whatever reason. It now will have more dev components than just v0.12.0 but that's okay
A very substantial PR by several people.
Myloasm stefanfixes
Ran with build_dep_defs_from_pixi.py. To update snakemake and other dependencies
Fix symlink names in README.md
Add checkm2 feature with activation environment configuration
Add benchmarking to prepare_binning_files rules
Myloasm stefanfixes
…tion instructions
…o dev for dependency management
Update doc
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