This package contains the helper files that are required to run the CopywriteR R package. It contains pre-assembled 1kb bin GC-content and mappability GRanges objects for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. These files are used to create custom bin size helper files using the preCopywriteR function from the CopywriteR package.
The package contains the accessor function getPathHelperFiles(reference.genome) which returns the full path to the helper files folder for the relevant reference genomes. For installation instructions, please refer to the CopywriteR GitHub webpage.