CURE class Presentation Files and Exercises.
These presentations and exercises are intended for students with no prior experience with UNIX and computational biology.
Week 1 (The Terminal)
Week 2 (Introduction to AMBER)
Based on Chapter 1 of Zuckerman's Statistical Physics of Biomolecules. Available in UF library.
Week 3 (Amber Exercises)
Week 4 (Structure Prediction using AI)
Week 5 (De novo protein design)
Week 6 (Sequence optimization using AI)
Articles