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davidsongroup/jaffa:2.5 Docker image fails under Singularity — writes to absolute root paths

Status: Open.

#137 In Oshlack/JAFFA;

· amarinderthind opened on Apr 10, 2026

jaffal error when using a non-supported genome without available Ensembl annotations

Status: Open.

#136 In Oshlack/JAFFA;

· ZDD116 opened on Apr 10, 2026

review nextflow implementation of jaffaL

Status: Open.

#131 In Oshlack/JAFFA;

· yinshiyi opened on Feb 8, 2026

Issue running JAFFAL in container 2.4-devel with ONT data

Status: Open.

#128 In Oshlack/JAFFA;

· vinimfava opened on Feb 3, 2026

use jaffa conda container to run jaffal

Status: Open.

#124 In Oshlack/JAFFA;

· yinshiyi opened on Jan 20, 2026

How to remove filter for Jaffal results ?

Status: Open.

#121 In Oshlack/JAFFA;

· wdesaintjean opened on Nov 4, 2025

Fix reflective access warning on Docker image

Status: Open.

#118 In Oshlack/JAFFA;

· olliecheng opened on Jun 26, 2025

Issue with std::regex_error in JAFFAL using Long method on mm10 Nanopore

Status: Open.

#117 In Oshlack/JAFFA;

· Bioinfor-Lix opened on Jun 25, 2025

JAFFAL error using custom hg38 GENCODE v44

Status: Open.

#116 In Oshlack/JAFFA;

· lauren-tjoeka opened on Jun 25, 2025

Issues trying to run Jaffa General error during conversion: Unsupported class file major version 65

Status: Open.

#115 In Oshlack/JAFFA;

· alig99 opened on Jun 24, 2025

About numbers of "supporting reads" in jaffa_results.csv and ".fastq.reads" files

Status: Open.

#114 In Oshlack/JAFFA;

· nofre03 opened on Jun 11, 2025

[likely bug]: reformat.sh from bbmap (ReformatReads) fails

Status: Open.

#113 In Oshlack/JAFFA;

· tamuanand opened on May 30, 2025