Finish merging dev into main

README.md

@@ -2,21 +2,29 @@
 
 This repository contains code used to create the State of the Ecosystem reports for the Mid Atlantic and New England regions, as well as the resulting report documents and presentation slides.
 
-## 2026 report -- **drafting in progress**
-
-These documents are in progress and subject to change. Please check back later for the final published versions.
+## 2026 report 
 
 ### Report documents
 
-- [Mid Atlantic](midatlantic.pdf) (*in progress -- has not been updated with 2026 data*)
-- [New England](newengland.pdf) (*in progress -- has not been updated with 2026 data*)
-- [Combined report](bothregions.pdf) (to assist with editing only, will not be published as a final report) (*in progress -- has not been updated with 2026 data*)
+- [2026 Mid-Atlantic Council report](SOE2026_MAFMC_Council.pdf) 
+- [2026 Mid-Atlantic SSC report](SOE2026_MAFMC_SSC.pdf) 
+- [2026 New England SSC and Council report](SOE2026_NEFMC_IR_Edits.pdf)
+
+### Supporting documents
+
+- [2026 Research Response Memo](SOE_Response_Memo.pdf)
+- [2026 Mid-Atlantic Cover Letter](SOE2026_MAFMC_Cover_Letter.pdf)
+- [2026 New England Cover Letter](SOE2026_NEFMC_Cover_Letter.pdf)
 
 ### Presentation slides
 
-- [Mid Atlantic](midatlantic.html) (*in progress -- has not been updated with 2026 data*)
-- [New England](newengland.html) (*in progress -- has not been updated with 2026 data*)
-- [Combined report](parent_presentation.html) (to assist with editing only, will not be presented as a final report) (*in progress -- has not been updated with 2026 data*)
+- [Mid Atlantic Council slides](SOE2026_MAFMC.html) 
+- [Mid Atlantic SSC slides](SOE2026_MAFMC_SSC.html) 
+- [New England Council slides](SOE2026_NEFMC_final.html) 
+- [New England SSC slides](SOE2026_NEFMC_SSC_final_V2.html)
+- [SOE 2026 Overview Seminar](parent_presentation_overview_seminar.html) 
+- [CESCC slides](SOE2026_newengland_CESC.html) 
+- [ECCG slides](SOE2026_newengland_ECCG.html) 
 - [Synthesis meeting slides](parent_presentation_synthesis.html) (*updated as of 1/14/2026*)
 
 ## How to update the reports
@@ -34,5 +42,17 @@ Steps to update figures and captions:
 1. If you are adding a new figure, add it to the appropriate Rmarkdown with the syntax: `return_plot("chunk-name", region = "RegionName")`, where `chunk-name` is the lookup key in the `figure_captions_summary.csv` spreadsheet and `RegionName` is either `MidAtlantic`, `NewEngland`, or `BothRegions` (for figures that appear in both reports).
 1. Re-knit the report from `run_reports.R` script.
 
+### Ensuring that htmls are archivable
+
+Ensure that your final html is knitted with the following setting:
+
+```
+format:
+  revealjs:
+    embed-resources: true 
+```
+
+This will create a self-contained html file that can be archived and shared. The parent presentation qmds used in 2026 already have this feature enabled.
+
 #### Legal Disclaimer
 This repository is a scientific product and is not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA GitHub project code is provided on an ‘as is’ basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this GitHub project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government.