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Pull requests: NCATSTranslator/Babel

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Pull requests list

build(deps-dev): bump rumdl from 0.2.4 to 0.2.9 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#839 opened Jun 7, 2026 by dependabot Bot Loading…
build(deps): bump snakemake-executor-plugin-slurm from 2.7.0 to 2.7.1 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#838 opened Jun 7, 2026 by dependabot Bot Loading…
build(deps): bump tqdm from 4.67.3 to 4.68.1 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#837 opened Jun 7, 2026 by dependabot Bot Loading…
build(deps): bump snakemake from 9.21.1 to 9.22.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#836 opened Jun 7, 2026 by dependabot Bot Loading…
build(deps-dev): bump ruff from 0.15.15 to 0.15.16 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#835 opened Jun 7, 2026 by dependabot Bot Loading…
SLURM performance tracking and resource right-sizing
#833 opened Jun 5, 2026 by gaurav Collaborator Loading…
address issue #751 to download and add all MacromolecularComplex IDs
#831 opened Jun 5, 2026 by hyi Contributor Loading…
5
Add protein/chemical overlap report
#830 opened Jun 4, 2026 by gaurav Collaborator • Draft
Babel 1.17
#824 opened Jun 4, 2026 by gaurav Collaborator • Draft
docs: add temporary plan for centralizing MeSH tree-number partitioning
#812 opened May 29, 2026 by gaurav Collaborator • Draft
Unify UMLS semantic-type to Biolink-class mappings into one registry
#804 opened May 29, 2026 by gaurav Collaborator Loading…
Add MP (Mammalian Phenotype Ontology) as a disease/phenotype source
#790 opened May 26, 2026 by gaurav Collaborator Loading…
6 tasks
Add EMAPA as an anatomy source
#781 opened May 20, 2026 by gaurav Collaborator Loading…
2 of 7 tasks
2
Add docs/NewIssue.md and consolidate issue-filing guidance
#775 opened May 17, 2026 by gaurav Collaborator • Draft Translator June Hackathon 2026
1
3
Pipeline tests for labels
#755 opened May 13, 2026 by gaurav Collaborator • Draft
Add source-impact report tool for new Babel data sources
#742 opened Apr 30, 2026 by gaurav Collaborator Loading…
3 tasks
10
Add config/rule drift checks for all semantic-type id lists
#728 opened Apr 22, 2026 by gaurav Collaborator Loading… Improved testing
2
Add near-end-to-end tests for write_compendium() label selection
#726 opened Apr 18, 2026 by gaurav Collaborator Loading… Improved testing
5
Reduce peak RSS of cross-compendium DuckDB checks via two-pass queries
#703 opened Mar 30, 2026 by gaurav Collaborator Loading…
4
Add conflation taxon report
#697 opened Mar 17, 2026 by gaurav Collaborator • Draft Improved testing
1
Add UMLS report generator
#683 opened Mar 5, 2026 by gaurav Collaborator • Draft
6
Add generic SQL report system for drop-in .sql report files
#671 opened Feb 24, 2026 by gaurav Collaborator • Draft
1 task
Improved testing
10
Add contributors
#615 opened Nov 7, 2025 by gaurav Collaborator • Draft
1
Feat/use rust for datacollect
#588 opened Sep 25, 2025 by gaurav Collaborator • Draft
2
Bulk normalize
#564 opened Sep 9, 2025 by gaurav Collaborator • Draft
1
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