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  1. Cohort_Chef Cohort_Chef Public

    This pipeline takes in a joint called vcf from GenPipes v.6.1.0 and provides additional sample level and variant level quality control. A full html report is then written describing the cohort qual…

    Shell

  2. Cohort_Chef_Dragen Cohort_Chef_Dragen Public

    This is the sister tool to Cohort Chef which does not rely on Genpipes. Originally designed with DRAGEN aligned VCFs, any joint called VCF along with sample BAM/CRAM files can run through this flex…