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Small changes to segmentation handling#1

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Erasdna wants to merge 3 commits into
mainfrom
CSF-seg
Open

Small changes to segmentation handling#1
Erasdna wants to merge 3 commits into
mainfrom
CSF-seg

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@Erasdna

@Erasdna Erasdna commented May 29, 2026

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  1. CSF mask from T2 now overwrites the parenchymal signal
  2. Add option to save temporary files for debugging (will also allow you to redo the choice above if there is an issue)
  3. Add handling of non-existent parent directory for output paths (create directory if it does not exist)

@Erasdna Erasdna requested a review from MariusCausemann May 29, 2026 07:18
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