Reproducible health data science short course

This repository contains the code for the short course practical sessions. Each branch documents the steps taken during the course.

To run

Install the following R packages:

perishky/meffonym
data.table
R.utils
ggplot2
ggrepel
readxl
here

And then run

bash download-data.sh
Rscript download-pan-cancer-clinical.r . results
Rscript run-analysis.r . results