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36 extend workflowoutput class for sampletype handling#37

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36-extend-workflowoutput-class-for-sampletype-handling
Open

36 extend workflowoutput class for sampletype handling#37
marrip wants to merge 9 commits into
developfrom
36-extend-workflowoutput-class-for-sampletype-handling

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@marrip

@marrip marrip commented Jul 22, 2026

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  • I have extended the tsv parser to handle csv as well and created two separate functions calling the core function with different separators; also section files without empty lines in between sections can be handled now
  • the WorkflowOutput class parses the samplesheet now which allows to check for existing samples
  • I have added a nomenclature class which takes a nomenclature yaml as input and can be used to gather meta information from any sample following the inpred sample id nomenclature, other samples will return a None type

@marrip
marrip requested a review from molversmyr July 22, 2026 13:19
@marrip marrip self-assigned this Jul 22, 2026
@marrip marrip added the enhancement New feature or request label Jul 22, 2026
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