Harmonize additional BodyPartExamined values in dicom_metadata_curated#138
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fedorov wants to merge 1 commit into
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Harmonize additional BodyPartExamined values in dicom_metadata_curated#138fedorov wants to merge 1 commit into
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Make the BodyPartExamined CASE comparison case-insensitive via UPPER() so mixed-case source values (Chest, Kidney, Pelvis, Thorax, J brzuszna) collapse onto their canonical form, and add mappings for non-standard values found in idc_current that map cleanly to DICOM defined terms: - LEFT BREAST / RIGHT BREAST -> BREAST (566 series) - BONYPELVIS -> PELVIS (92 series) - LEG -> LOWERLIMB (16 series) - TH CT CHEST WO C -> CHEST (16-char protocol truncation, 11 series) - BD CT ABD WO_W C -> ABDOMEN (16-char protocol truncation, 2 series) Verified against bigquery-public-data.idc_current.dicom_all: 687 series / 5,436 instances change, with no unintended remappings. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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Make the BodyPartExamined CASE comparison case-insensitive via UPPER() so mixed-case source values (Chest, Kidney, Pelvis, Thorax, J brzuszna) collapse onto their canonical form, and add mappings for non-standard values found in idc_current that map cleanly to DICOM defined terms:
Verified against bigquery-public-data.idc_current.dicom_all: 687 series / 5,436 instances change, with no unintended remappings.