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chore(deps): refresh pinned versions (noodles 0.89/0.94, cargo update)
enhancementNew feature or requestNew feature or requestStatus: Open.#33 In IPNP-BIPN/STAR-rs;docs(deps): record the declined crates in DEPENDENCIES.md
documentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#32 In IPNP-BIPN/STAR-rs;deps: evaluate wide / pulp SIMD (gated on profiling)
enhancementNew feature or requestNew feature or requestStatus: Open.#31 In IPNP-BIPN/STAR-rs;dev-deps: add a benchmark harness (divan or criterion) + evaluate insta, assert_cmd, tempfile
enhancementNew feature or requestNew feature or requestStatus: Open.#30 In IPNP-BIPN/STAR-rs;deps: evaluate bytemuck / zerocopy for index buffer casts
enhancementNew feature or requestNew feature or requestStatus: Open.#29 In IPNP-BIPN/STAR-rs;deps: evaluate memchr for byte scanning on the FASTQ/SAM hot paths
enhancementNew feature or requestNew feature or requestStatus: Open.#28 In IPNP-BIPN/STAR-rs;deps: evaluate rustc-hash / foldhash for lookup-only hash maps
enhancementNew feature or requestNew feature or requestStatus: Open.#27 In IPNP-BIPN/STAR-rs;deps: evaluate an external sort for memory-bounded BAM coordinate sorting
enhancementNew feature or requestNew feature or requestStatus: Open.#26 In IPNP-BIPN/STAR-rs;deps: evaluate libdeflater / gzp / rapidgzip for gzipped-input decompression
enhancementNew feature or requestNew feature or requestStatus: Open.#25 In IPNP-BIPN/STAR-rs;deps: evaluate memmap2 for index loading (and --genomeLoad shared modes)
enhancementNew feature or requestNew feature or requestStatus: Open.#24 In IPNP-BIPN/STAR-rs;deps: evaluate paraseq for paired FASTQ reading
enhancementNew feature or requestNew feature or requestStatus: Open.#23 In IPNP-BIPN/STAR-rs;deps: evaluate libsais / libsais-rs as the genomeGenerate suffix-array constructor
enhancementNew feature or requestNew feature or requestStatus: Open.#22 In IPNP-BIPN/STAR-rs;