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feat: add repo staleness detection and refresh across MCP, API, and CLI#18

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eddiefleurent wants to merge 5 commits into
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eddiefleurent:feature/repo-staleness-detection
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feat: add repo staleness detection and refresh across MCP, API, and CLI#18
eddiefleurent wants to merge 5 commits into
HKUDS:mainfrom
eddiefleurent:feature/repo-staleness-detection

refactor: move repo fields from RefreshRepoRequest to StatusResponse

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