Boolean_TCE_modeling_2023

Code and figures related to Ildefonso & Finley npj Systems Biology 2023

Repository Structure:

• model-files : this folder contains both the Boulori WT model code and PD1 blockade code to run the model
• data_files : contains all data produced from Boolean model, used and generated in data/WT and data/PD1_block.
  • WT : folder for all model output from WT
    • all_sims : contains simulation output for all ten thousand WT simulations
    • ES1_sims : data file results for ES1
    • ES2_sims : data file results for ES2
    • ES3_sims : data file results for ES3
    • ES4_sims : data file results for ES4
    • ES5_sims : data file results for ES5
    • ES6_sims : data file results for ES6
    • ES7_sims : data file results for ES7
    • ES8_sims : data file results for ES8
  • PD1_block : folder for all model output from WT
    • all_PD1_block_sims : contains simulation output for all ten thousand PD1 blockade simulations
    • ES1_sims : data file results for ES1
    • ES2_sims : data file results for ES2
    • ES3_sims : data file results for ES3
    • ES4_sims : data file results for ES4
    • ES5_sims : data file results for ES5
    • ES6_sims : data file results for ES6
    • ES7_sims : data file results for ES7
    • ES8_sims : data file results for ES8