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Add stratiffication for hospital #34

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Merged
javier-gracia-tabuenca-tuni merged 3 commits into from
Jun 12, 2026
Merged

Add stratiffication for hospital #34

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3a7c0d8
Add `visitSourceGroupConceptIds` option to `runApiServer` and pass to…
javier-gracia-tabuenca-tuni Jun 12, 2026
3e21b8c
docs: add `visitSourceGroupConceptIds` argument to `runApiServer` Rd …
javier-gracia-tabuenca-tuni Jun 12, 2026
7b2e431
docs: document `visitSourceGroupConceptIds` parameter in `runApiServe…
javier-gracia-tabuenca-tuni Jun 12, 2026
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4 changes: 3 additions & 1 deletion R/runApiServer.R
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Original file line number Diff line number Diff line change
Expand Up @@ -10,6 +10,7 @@
#' @param host Host address to run the API server on. Defaults to "127.0.0.1"
#' @param port Port number to run the API server on. Defaults to 8564
#' @param buildCountsTable Logical indicating whether to build code counts tables. Defaults to FALSE
#' @param visitSourceGroupConceptIds Numeric vector of source concept IDs used to define visit source groups when `buildCountsTable = TRUE`. Defaults to `0`.
#' @param ... Additional arguments passed to plumber::pr_run()
#'
#' @importFrom plumber pr pr_run pr_set_docs pr_set_api_spec
Expand All @@ -35,6 +36,7 @@ runApiServer <- function(
host = "127.0.0.1",
port = 8564,
buildCountsTable = FALSE,
visitSourceGroupConceptIds = 0,
...) {
#
# VALIDATE
Expand Down Expand Up @@ -62,7 +64,7 @@ runApiServer <- function(

if (buildCountsTable == TRUE) {
ParallelLogger::logInfo("Building code counts tables")
createCodeCountsTables(CDMdbHandler, codeCountsTable = "code_counts")
createCodeCountsTables(CDMdbHandler, codeCountsTable = "code_counts", visitSourceGroupConceptIds = visitSourceGroupConceptIds)
}

# Call getConceptsWithCodeCounts, to populate the cache
Expand Down
3 changes: 3 additions & 0 deletions man/runApiServer.Rd
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