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…d sequences at runtime, giving them to the model, then mapping the outputs back to original alignment positions. Set handle_aligned=False for subclasses that actually use gaps during inference if inheritting from PositionSpecificMixin
…ers in structure conditioned models
… an inner predictor. Not as a seperate transformer because they might need metadata that the inner predictor does not directly output so cannot be used in standard sklearn transformer. Also added z scoring shift a la multi evolve
Codecov Report❌ Patch coverage is Additional details and impacted files@@ Coverage Diff @@
## main #33 +/- ##
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+ Coverage 79.31% 80.84% +1.52%
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Files 20 24 +4
Lines 2229 2532 +303
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+ Hits 1768 2047 +279
- Misses 461 485 +24
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EvanKomp
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Disjoint changes (package code/tests/docs vs data/projects/MDA_HACL/*), conflict-free. Unifies main: package features + MDA_HACL hyperopt/CV/ sensitivity/selections + trained-model restore point.
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esm1f and zscore a la multievolve, added the first stage of multievolve built with aide as an example