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@Ecogenomics

Australian Centre for Ecogenomics

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  1. GTDBTk GTDBTk Public

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

    Python 588 97

  2. CheckM CheckM Public

    Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Python 406 77

  3. gtdb-species-clusters gtdb-species-clusters Public

    Toolkit for establishing, updating, and validating GTDB species clusters

    Python 20 3

  4. BamM BamM Public archive

    Metagenomics-focused BAM file manipulation

    C 15 7

  5. GTDBNCBI GTDBNCBI Public

    The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for ar…

    Python 9 2

  6. Mannotator Mannotator Public archive

    Microbial annotation pipeline - in progress

    Perl 5 5

Repositories

Showing 10 of 39 repositories
  • gTranslate Public

    Software tool designed to accurately identify the genetic translation table (GTT) used in prokaryotic organisms.

    Ecogenomics/gTranslate’s past year of commit activity
    Python 4 GPL-3.0 0 0 0 Updated Apr 11, 2026
  • GTDBTk Public

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

    Ecogenomics/GTDBTk’s past year of commit activity
    Python 588 GPL-3.0 97 24 0 Updated Apr 10, 2026
  • gtdb.ecogenomic.org Public

    https://gtdb.ecogenomic.org/

    Ecogenomics/gtdb.ecogenomic.org’s past year of commit activity
    Vue 2 1 13 0 Updated Apr 7, 2026
  • hatchet Public

    Tools used to split the GTDB-Tk reference tree into smaller sub trees

    Ecogenomics/hatchet’s past year of commit activity
    Python 1 0 0 0 Updated Apr 4, 2026
  • gtdb-release-tk Public

    Toolkit for updating the GTDB to the next release and generating data files for the GTDB website.

    Ecogenomics/gtdb-release-tk’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Apr 1, 2026
  • api.gtdb.ecogenomic.org Public

    https://api.gtdb.ecogenomic.org/

    Ecogenomics/api.gtdb.ecogenomic.org’s past year of commit activity
    Python 3 GPL-3.0 0 2 0 Updated Mar 31, 2026
  • gtdb-species-clusters Public

    Toolkit for establishing, updating, and validating GTDB species clusters

    Ecogenomics/gtdb-species-clusters’s past year of commit activity
    Python 20 3 0 0 Updated Mar 23, 2026
  • gtdb-lib Public

    An abstraction of objects, files, and third-party tools used by the GTDB. Not intended for public use.

    Ecogenomics/gtdb-lib’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Mar 11, 2026
  • CheckM Public

    Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Ecogenomics/CheckM’s past year of commit activity
    Python 406 GPL-3.0 77 8 0 Updated Mar 2, 2026
  • gtdb-migration-tk Public

    Toolkit for updating the GTDB to the next release and test data

    Ecogenomics/gtdb-migration-tk’s past year of commit activity
    Python 1 0 1 0 Updated Feb 17, 2026
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