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Pull requests: DerrickWood/kraken2
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Reduce lock contention and skip discarded work in
classify
#1039
opened Sep 4, 2026 by
BenLangmead
Collaborator
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Fix strip trailing slash from NCBI ftp_path to prevent malformed download URLs
#1015
opened Mar 9, 2026 by
inspirewind
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1 task done
Parallel manifest.txt file download for rsync_from_ncbi.pl
#890
opened Nov 20, 2024 by
jonathancosme
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fix: exclude ambiguous bases from confidence scoring calculation
#879
opened Sep 11, 2024 by
mcolpus
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Fix issue with Silva having domain and superkingdom taxonomic ranks both converted to superkingdom (D) in Kraken
#745
opened Jul 31, 2023 by
Thomas-Bcp
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Check existence output folder prior to running kraken2
#718
opened May 9, 2023 by
TheOafidian
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fixed library & taxonomy download functions and added multiprocessing to speed up downloads
#698
opened Mar 12, 2023 by
eladc
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Updated kraken2-build to allow symlinks in the library directory
#603
opened Jun 20, 2022 by
oracle5th
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Refresh FTP connection for downloading libraries with
--use-ftp
#406
opened Jan 26, 2021 by
tokarevvasily
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