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1 change: 1 addition & 0 deletions .Rbuildignore
Original file line number Diff line number Diff line change
Expand Up @@ -22,3 +22,4 @@
^\.jules(/.*)?$
^\.trivyignore\.yaml$
^trivy\.yaml$
.semgrepignore
5 changes: 5 additions & 0 deletions .jules/sentinel.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,3 +2,8 @@
**Vulnerability:** Unvalidated inputs passed to `if()` statements can cause process crashes (`condition has length > 1`) or unexpected coercion vulnerabilities.
**Learning:** In R, optional boolean parameters that default to `NULL` should be validated using explicit runtime type validation (e.g., `if (!is.null(flag) && (!is.logical(flag) || length(flag) != 1 || is.na(flag)))`).
**Prevention:** Always implement explicit runtime type validation for optional boolean parameters.

## 2024-07-28 - Fix integer overflow coercion in readline input validation
**Vulnerability:** Unbounded digit class regex (e.g., `^[0-9]+$`) used for validating user input expecting a single-digit integer choice allows extremely large numeric strings to pass the regex check, which subsequently evaluate to `NA` in `as.integer(n)`. This causes a process crash due to `missing value where TRUE/FALSE needed`.
**Learning:** When validating interactive `readline()` numeric inputs in R, unbounded regex checks allow integer overflow coercion vulnerabilities.
**Prevention:** Strictly match against exact expected values (e.g., `^[12]$`) instead of using unbounded digit classes to ensure the input evaluates safely and correctly.
6 changes: 3 additions & 3 deletions R/aFIPC.R
Original file line number Diff line number Diff line change
Expand Up @@ -141,7 +141,7 @@ autoFIPC <-
}
for (attempt in seq_len(3)) {
n <- readline(prompt = "Is it correct? (1: Yes 2: No) : ")
if (grepl("^[0-9]+$", n)) {
if (grepl("^[12]$", n)) {
return(as.integer(n))
}
}
Expand Down Expand Up @@ -171,7 +171,7 @@ autoFIPC <-
readline(
prompt = "Do you want to use default BILOG-MG priors for oldform Data? (1: Yes 2: No) : "
)
if (grepl("^[0-9]+$", n)) {
if (grepl("^[12]$", n)) {
return(as.integer(n))
}
}
Expand Down Expand Up @@ -390,7 +390,7 @@ autoFIPC <-
readline(
prompt = "Do you want to use default BILOG-MG priors for newform Data? (1: Yes 2: No) : "
)
if (grepl("^[0-9]+$", n)) {
if (grepl("^[12]$", n)) {
return(as.integer(n))
}
}
Expand Down
2 changes: 0 additions & 2 deletions test_dummy.R

This file was deleted.

3 changes: 0 additions & 3 deletions test_validation.R

This file was deleted.

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