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CholGen

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sequencing-resources sequencing-resources Public
linux-learning linux-learning Public

Shell
bacpage bacpage Public

Forked from watronfire/Eureka

Snakemake pipeline for analysis of pathogen genomes. Will be pathogen-agnostic in the future but is currently designed for *Vibrio Cholerae*

Python 7

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Showing 7 of 7 repositories

bacpage Public Forked from watronfire/Eureka
Snakemake pipeline for analysis of pathogen genomes. Will be pathogen-agnostic in the future but is currently designed for *Vibrio Cholerae*

CholGen/bacpage's past year of commit activity

Python 7 GPL-3.0 1 5 0 Updated Apr 15, 2026
sequencing-resources Public

CholGen/sequencing-resources's past year of commit activity

0 0 0 0 Updated Sep 11, 2025
Vibecheck Public
An easy-to-use program to assign O1 Vibrio cholerae genomes to canonical lineages using phylogenetic placement.

CholGen/Vibecheck's past year of commit activity

Jupyter Notebook 9 GPL-3.0 0 4 0 Updated Jul 30, 2025
RegionalAnalysis-2024 Public

CholGen/RegionalAnalysis-2024's past year of commit activity

Jupyter Notebook 1 1 0 0 Updated Jul 21, 2025
CholGen-Workshop-2024 Public
Resources for the CholGen workshop in February 2024

CholGen/CholGen-Workshop-2024's past year of commit activity

HTML 0 1 0 0 Updated Apr 12, 2024
cholgen.github.io Public

CholGen/cholgen.github.io's past year of commit activity

HTML 0 0 0 0 Updated Jan 10, 2024
linux-learning Public

CholGen/linux-learning's past year of commit activity

Shell 0 0 0 0 Updated Sep 18, 2023

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