RISING 3D Codes - #206
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RISING 3D codes are added for both the LIDC-IDRI and ACMIT (WN) datasets.
There are some files that are modified/ newly created in the LION framework:
LION/CTtools/ct_geometry.py
LION/experiments/ct_experiments.py
LION/models/LIONmodel.py
LION/optimizers/LIONsolver.py
LION/data_loaders/Z_ImageDataset3D.py
LION/data_loaders/Z_WN_ImageDataset3D.py
LION/models/post_processing/Z_RISINGConvNet_3D.py
LION/optimizers/Z_RISINGSolver.py
And there are some files that are runnable Python scripts for the RISING pipeline:
Final_LIDCIDRI_3DVolume_maker.py
Final_LIDCIDRI_ConvergedReconTARGETMaker.py
Final_LIDCIDRI_RISINGInference.py
Final_LIDCIDRI_RISINGTraining.py
Final_LIDCIDRI_RapidReconDATAMaker.py
Final_LIDCIDRI_SinogramMaker.py
Final_WN_ConvergedReconTARGETMaker.py
Final_WN_RISINGInference.py
Final_WN_RISINGTraining.py
Final_WN_RapidReconDATAMaker.py
### CSV File:
Also, "slice_thicknesses_all_patients.csv" contains the slice thickness extracted from the DICOM header of the original LIDC-IDRI dataset. This information will be needed to create the 3D images and the digital sinogram.