hmseekr_manuscript

Codes for Scanning transcriptomes for nonlinear, domain-level similarities using hmSEEKR

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Scanning transcriptomes for nonlinear, domain-level similarities using hmSEEKR

Name		Name	Last commit message	Last commit date
Latest commit History 64 Commits
Fig1_define_transition_parameters		Fig1_define_transition_parameters
Fig2_random_insertion		Fig2_random_insertion
Fig3ABFig4A_individual_protein_interaction		Fig3ABFig4A_individual_protein_interaction
Fig3C_combinatorial_protein_interaction		Fig3C_combinatorial_protein_interaction
Fig4B_genetype_genefeature		Fig4B_genetype_genefeature
Fig5A_sequential_search		Fig5A_sequential_search
Fig5B_semi_extractability		Fig5B_semi_extractability
Fig5CDE_protein_association_network_expression_stability		Fig5CDE_protein_association_network_expression_stability
Fig6_regulatory_domains		Fig6_regulatory_domains
GTEx		GTEx
README.md		README.md
activator_repressor_seqs.fa		activator_repressor_seqs.fa
gridsearch_allinfo.csv		gridsearch_allinfo.csv
hmseekr_readme.docx		hmseekr_readme.docx
readcounts_pre_filter_eCLIP_11_7_24_all.txt		readcounts_pre_filter_eCLIP_11_7_24_all.txt
v47.lncRNA.can.500.nodup.OT1fixed.fa.zip		v47.lncRNA.can.500.nodup.OT1fixed.fa.zip
v47_filtered_ot1fixed_unspliced.bed		v47_filtered_ot1fixed_unspliced.bed