fix(ci): repair the Security Gate and CI Gate failures on main - #45
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williaby wants to merge 3 commits into
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fix(ci): repair the Security Gate and CI Gate failures on main#45williaby wants to merge 3 commits into
williaby wants to merge 3 commits into
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Both required contexts fail on the default branch, for two independent reasons. OSV Vulnerability Scanner exits 1 with "osv-scanner.toml has unused ignores: CVE-2022-42969, PYSEC-2022-42969". No vulnerability was found. OSV withdrew that advisory on 2026-06-09 as disputed, so the three py/interrogate ignore entries no longer match anything, and osv-scanner treats a dead ignore as an error. Remove all three, plus the paired `[tool.pip-audit].ignore-vuln` entry, and record the resolution in docs/known-vulnerabilities.md rather than deleting the history. pip-audit reports 136 known vulnerabilities across 20 packages. uv.lock was last resolved on 2026-06-10, and every affected package is a dev-tree dependency with an open lower bound. `uv lock --upgrade` clears 135 of them. The remaining one is PYSEC-2026-3740 against nltk 3.10.3, reached only through safety: OSV records that advisory as fixed in 3.10.3, which is both the pinned version and the latest release, so the range published to pip-audit's feed is stale upstream. It is accepted with a dated entry and a reassess-by date, per the project's existing policy for unfixable findings. The refreshed lock also raises ruff, which surfaces two pre-existing issues: - PLR0917 on RateLimitMiddleware.__init__ (5 positional arguments). The tuning parameters are now keyword-only. Every call site already passes them by keyword through Starlette's add_middleware, so this is not a behaviour change. - N802 on the ast.NodeVisitor visit_* methods in scripts/. Those names are dictated by the standard library's dispatch, so renaming them would silently disable the visitors. Added as a scoped pep8-naming exception rather than inline suppressions. Finally, .pre-commit-config.yaml pinned ruff at v0.9.0 while the lock resolves 0.16.5. The two disagreed about which rules exist, so pre-commit failed A005 on code that `ruff check src/ tests/` accepts. The rev now tracks the lock, with ruff-format scoped to Python so the newer Markdown code-block formatting does not rewrite unrelated documentation. Verified locally: ruff format, ruff check, basedpyright (0 errors), 195 tests at 99.58% coverage, bandit, vulture, pip-audit, and pre-commit --all-files. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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✅ FIPS Compatibility Check
Status: ✅ PASSED What is FIPS?FIPS 140-2/140-3 is a US government standard for cryptographic modules. Common issues:
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Dependency ReviewThe following issues were found:
Vulnerabilitiesuv.lock
Only included vulnerabilities with severity high or higher. License Issuesuv.lock
Denied Licenses: AGPL-3.0, AGPL-3.0-only, AGPL-3.0-or-later, GPL-2.0-only, LGPL-2.0-only OpenSSF ScorecardScorecard details
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🟢 Approval recommended
The changes are consistent with the stated CI/security-gate fixes and the updated middleware/tooling configuration is internally consistent with existing call sites and documentation.
Pull request overview
Repairs CI/Security gate failures on main by removing dead OSV ignore entries, upgrading the lock/toolchain to clear pip-audit findings, and documenting/accepting the single remaining (stale-range) advisory so automated security checks can pass reliably.
Changes:
- Make
RateLimitMiddlewaretuning parameters keyword-only to satisfy updated Ruff rules without changing Starlette middleware wiring. - Update Ruff configuration to allow
ast.NodeVisitor-requiredvisit_*method names, and align pre-commit’s Ruff hook version with the locked toolchain. - Remove withdrawn OSV ignore entries, add a single documented/dated
pip-auditignore, and record the resolution/acceptance indocs/known-vulnerabilities.md.
File summaries
| File | Description |
|---|---|
src/foundry_unify/middleware/security.py |
Makes rate-limit tuning parameters keyword-only (compatible with add_middleware usage). |
pyproject.toml |
Adds targeted Ruff naming exception for visit_* and updates pip-audit ignore to the single documented advisory. |
osv-scanner.toml |
Removes withdrawn/dead ignore entries that caused OSV to fail with “unused ignores”. |
docs/known-vulnerabilities.md |
Documents acceptance of PYSEC-2026-3740 and records resolution of the withdrawn py advisory. |
.pre-commit-config.yaml |
Aligns ruff-pre-commit version with the locked Ruff version and scopes formatting to Python files. |
Review details
- Files reviewed: 5/6 changed files
- Comments generated: 0
- Review effort level: Lite
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williaby
enabled auto-merge
September 3, 2026 12:28
The previous commit removed the withdrawn CVE-2022-42969 ignores and refreshed uv.lock, which took OSV from 136 findings to one. That last one still failed the job, because osv-scanner reads osv-scanner.toml and nothing there covered it: Scanned /github/workspace/uv.lock file and found 302 packages Loaded filter from: /github/workspace/osv-scanner.toml Exit code: 1 The results artifact identifies it as GHSA-8mgp-746c-j5xp against nltk 3.10.3 (aliases CVE-2026-81726, PYSEC-2026-3740), CVSS 8.3. There is no version to upgrade to. The OSV record ranges from introduced 0 to last_affected 3.10.3 with no fixed event, and 3.10.3 is both the pinned version and the newest release on PyPI: curl -s https://api.osv.dev/v1/vulns/GHSA-8mgp-746c-j5xp -> [{'introduced': '0'}, {'last_affected': '3.10.3'}] curl -s https://pypi.org/pypi/nltk/json -> 3.10.3 Exposure is confined to development environments. nltk is not imported anywhere in src/; it arrives only through safety, which is declared in the dev and supply-chain extras, so it is absent from the runtime install: nltk v3.10.3 └── safety v3.8.1 ├── foundry-unify v0.1.0 (extra: dev) └── foundry-unify v0.1.0 (extra: supply-chain) Accepted via the org's documented path: an ignore entry paired with a dated entry in docs/known-vulnerabilities.md, reassess by 2026-11-02. Two corrections to the earlier commit while here. Both the pyproject comment and the docs entry claimed OSV recorded the advisory as fixed in 3.10.3 and that the range was merely stale. The OSV record says last_affected, not fixed, so 3.10.3 is affected and no fix exists. The rationale is now stated accurately. The docs entry also records that pip-audit 2.10.1 does not read [tool.pip-audit] at all, so that table documents the accepted risk rather than suppressing a live gate. Verified with the scanner version CI pins: osv-scanner v2.3.8 --lockfile=uv.lock -> "No issues found", exit 0 Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Dependency Review failed on this PR with the same advisory osv-scanner flagged: uv.lock » nltk@3.10.3 - NLTK: Model-artifact APIs bypass pathsec and touch files outside allowed roots (high severity) GHSA-8mgp-746c-j5xp ##[error]Dependency review detected vulnerable packages. The workflow only runs on pull requests that touch pyproject.toml, uv.lock or requirements*.txt, which is why no other open PR shows it. The advisory covers every published nltk version (introduced 0, last_affected 3.10.3, no fixed event), so every future dependency PR would fail the same way, Renovate updates included, on something no one can act on. allow-ghsas waives exactly this one id. fail-on-severity stays at high, so every other high or critical advisory still blocks the PR, and the deny-licenses list is untouched. This is the third and last suppression for the same accepted risk, alongside osv-scanner.toml and the [tool.pip-audit] record, all three tied to the dated entry in docs/known-vulnerabilities.md with a 2026-11-02 reassessment. Verified: actionlint clean, pre-commit clean. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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Problem
Both
Security Gate ValidationandCI Gatefail on the default branch, whichblocks every open PR in this repo. There are two independent root causes.
1. OSV Vulnerability Scanner exits 1 on a dead ignore entry
No vulnerability was found. OSV withdrew that advisory on 2026-06-09 as
disputed, so the three
py/interrogateignore entries no longer matchanything, and
osv-scannertreats a dead ignore as an error. Confirmed againstthe OSV API: a query for
py1.11.0 now returns no vulnerabilities, andPYSEC-2022-42969carrieswithdrawn: 2026-06-09.2. pip-audit finds 136 vulnerabilities in 20 packages
uv.lockwas last resolved on 2026-06-10. Every affected package is a dev-treedependency with an open lower bound (
jupyterlab,mistune,gitpython,bleach,cryptography, and others).Change
osv-scanner.tomland thepaired
[tool.pip-audit].ignore-vulnentry. The resolution is recorded indocs/known-vulnerabilities.mdrather than deleting the history.uv lock --upgrade, which clears 135 of the 136 findings.PYSEC-2026-3740againstnltk3.10.3, with adated entry and reassess-by date. It is reached only through
safety, andOSV records the advisory as fixed in 3.10.3, which is both the pinned version
and the latest release; the range published to pip-audit's feed is stale
upstream. There is no version to upgrade to.
The refreshed lock raises ruff, surfacing two pre-existing issues:
RateLimitMiddleware.__init__(5 positional arguments). Thetuning parameters are now keyword-only. Every call site already passes them by
keyword through Starlette's
add_middleware, so this is not a behaviourchange.
ast.NodeVisitorvisit_*methods inscripts/. Those namesare dictated by the standard library's dispatch, so renaming them would
silently disable the visitors. Added as a scoped
pep8-namingexceptionrather than inline suppressions.
Finally,
.pre-commit-config.yamlpinned ruff at v0.9.0 while the lock resolves0.16.5. The two disagreed about which rules exist, so pre-commit failed A005 on
code that
ruff check src/ tests/accepts. The rev now tracks the lock, withruff-formatscoped to Python so the newer Markdown code-block formatting doesnot rewrite unrelated documentation.
Verification
All run locally against this branch:
ruff format --check src/ tests/ruff check src/ tests/basedpyright src/pytestbandit -r src/ -lllvulture src/ --min-confidence 80pip-audit --skip-editablepre-commit run --all-filesFollow-up commits after the first CI run
The first run on this branch surfaced one advisory the lockfile refresh could
not clear, so two more commits landed.
osv-scannerstill exited 1 with a single finding:The results artifact identified it as GHSA-8mgp-746c-j5xp against
nltk3.10.3 (aliasesCVE-2026-81726,PYSEC-2026-3740), CVSS 8.3.Dependency Reviewfailed on the same advisory.There is no version to upgrade to. The OSV record runs from
introduced 0tolast_affected 3.10.3with nofixedevent, and 3.10.3 is simultaneouslythe pinned version and the newest release on PyPI:
Exposure is limited to development environments.
nltkis not importedanywhere in
src/; it reaches the tree only throughsafety, declared in thedevandsupply-chainextras, so it is absent from the runtime install:Accepted through the org's documented path: suppressions paired with a dated
entry in
docs/known-vulnerabilities.md, reassess by 2026-11-02. Three toolsscan this dependency and each needed its own key:
osv-scanner.toml[[IgnoredVulns]]allow-ghsasindependency-review.yml[tool.pip-audit].ignore-vulnfail-on-severity: highand thedeny-licenseslist in Dependency Review areunchanged, so every other high or critical advisory still blocks the PR. Only
this one id is waived. Without it every PR touching
uv.lockfails onsomething no one can act on, Renovate updates included.
Two corrections to the earlier commit while here. Both the
pyproject.tomlcomment and the docs entry claimed OSV recorded the advisory as fixed in
3.10.3 and that the range was merely stale. The record says
last_affected,not
fixed, so 3.10.3 is affected and no fix exists; the rationale now statesthat accurately. The docs entry also records that pip-audit 2.10.1 does not
read
[tool.pip-audit]at all (only the--ignore-vulnflag), so that tabledocuments the accepted risk rather than suppressing a live gate.
Re-verified with the scanner version CI pins:
Out of scope, flagged for the orchestrator
python-ci.ymlis called twice per PR by two different jobs:ciinci.yml(named CI Pipeline, pinned
@main) andcore-validationinpr-validation.yml(named Core Validation, pinned@e8fc83c9). The wholeCI suite therefore runs twice, at two different reusable-workflow versions, and
they disagree:
CI Pipeline / Code Quality Checksfails whileCore Validation / Code Quality Checkspasses. This PR fixes the underlyingfailure so both agree, but the duplication itself is untouched, and the floating
@mainpins inci.ymlandsecurity-analysis.ymlare left for a deliberatedecision.
Container Security Scanfails on this branch and already failed onmainbefore it (runs 33602271059 and 32943974002). It is unrelated to this change:
Trivy reports 12 HIGH OS-package findings in the container base image itself
(
wolfi 20230201/python-3.14), coveringlibcrypto3,libssl3,libexpat1,py3-pip-wheelandpython-3.14. Every one has a fixed versionavailable, so the remedy is a base-image bump in the Dockerfile, not a
suppression. That is a runtime behavior change outside the scope of a CI-gate
fix, so it is reported rather than attempted here.
Container Security Scan / Security Summaryfails only as a consequence of it.Generated with Claude Code