in [QUANTIFY_STRAND_BIAS subworkflow](https://github.com/stenglein-lab/remapping_workflow/blob/main/subworkflows/stenglein-lab/quantify_strand_bias.nf), should handle bam directly instead of going through a BAM_TO_SAM step. Could also use per-refseq bam.
in QUANTIFY_STRAND_BIAS subworkflow, should handle bam directly instead of going through a BAM_TO_SAM step. Could also use per-refseq bam.