Fish_Brain_Dynamics/params.json at main · soluchi07/Fish_Brain_Dynamics · GitHub

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{
    "data": {
	"fr": 30,
	"decay_time": 0.4,
	"dxy": [2.0, 2.0]
    },
    "init": {
	"nb": 2,
	"K": 4,
	"gSig": [4, 4],
	"method_init": "greedy_roi",
	"rolling_sum": true,
	"ssub": 2,
	"tsub": 2
    },
    "motion": {
	"pw_rigid": true,
	"max_shifts": [6, 6],
	"strides": [50, 50],
	"overlaps": [24, 24],
	"max_deviation_rigid": 3,
	"border_nan": "copy"
    },
    "preprocess": {
	"p": 1
    },
    "temporal": {
	"p": 1
    },
    "patch": {
	"rf": 15,
	"stride": 6,
	"only_init": true
    },
    "merging": {
	"merge_thr": 0.85
    },
    "quality": {
	"min_SNR": 2,
	"rval_thr": 0.85,
	"use_cnn": true,
	"min_cnn_thr": 0.99,
	"cnn_lowest": 0.1
	}
}