Dear developers,
Thank you for your excellent work.
I am running Piranha on a CLIP-seq dataset with IP and IgG in two biological replicates.
I would like to compare four different modalities: IP with and without covariates (bin_size_both = 50, cluster_dist = 100), IP with covariates (cluster_dist = 0), and IgG (without covariates).
For replicate two, I was able to complete all my analyses without issues, but for replicate one I cannot obtain the results with covariates because the software hangs.
I also tried running it on 10% of the dataset (the tail of the BED files), and I obtained a puzzling output:
9 96890150 94493573110080 -nan -nan
9 96890150 33554464 -nan -nan
Could I ask for your feedback?
Thank you,
Mattia
Dear developers,
Thank you for your excellent work.
I am running Piranha on a CLIP-seq dataset with IP and IgG in two biological replicates.
I would like to compare four different modalities: IP with and without covariates (bin_size_both = 50, cluster_dist = 100), IP with covariates (cluster_dist = 0), and IgG (without covariates).
For replicate two, I was able to complete all my analyses without issues, but for replicate one I cannot obtain the results with covariates because the software hangs.
I also tried running it on 10% of the dataset (the tail of the BED files), and I obtained a puzzling output:
9 96890150 94493573110080 -nan -nan
9 96890150 33554464 -nan -nan
Could I ask for your feedback?
Thank you,
Mattia