From 13924d3e7bd0ccf51bcc98b15792c7e76814772f Mon Sep 17 00:00:00 2001 From: Elizabeth Perl Date: Tue, 28 Jul 2026 11:54:18 -0400 Subject: [PATCH 1/2] Update environmental data description in 13output.tex Include summary numbers as noted in ss3-source-code PR [#780](https://github.com/nmfs-ost/ss3-source-code/pull/780#pullrequestreview-4798896062) --- 13output.tex | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/13output.tex b/13output.tex index c5306ea4..66105276 100644 --- a/13output.tex +++ b/13output.tex @@ -126,7 +126,7 @@ & & & \\ & & & \\ & & & \Bstrut\\ - 33 & ENVIRONMENTAL\_DATA & NA & The input values of environmental data are echoed here. Density-dependence can be used by linking to population quantities that have already been calculated at the start of the year. These include summary biomass, spawning biomass, and recruitment deviations. These three quantities are mapped into the -1, -2, and -3 columns of the environmental data matrix where they can be used as if there were environmental data input. \Bstrut\\ + 33 & ENVIRONMENTAL\_DATA & NA & The input values of environmental data are echoed here. Density-dependence can be used by linking to population quantities that have already been calculated at the start of the year. These include summary numbers, summary biomass, spawning biomass, and recruitment deviations. These quantities are mapped into the -1, -2, and -3 columns of the environmental data matrix where they can be used as if there were environmental data input. \Bstrut\\ 34 & TAG\_Recapture & \multirow{1}{1cm}[-0.25cm]{\parbox{4cm}{\$tagrelease, \#tagsalive, \$tagtotrecap, \$tagfirstperiod, \$tagaccumperiod, and \$tagreportrates}} & \multirow{1}{1cm}[-0.25cm]{\parbox{9.5cm}{Multiple tables of information on tagged fish (if included in the model) including details on each tag group, tags alive by release group and period, total recaptures by release group and period, and reporting rates by fishery.}} \\ & \textit{Tag recapture information} & & \\ & & & \Bstrut\\ From 607d0906fd666512ddb40c0368dfa2d47421a2c1 Mon Sep 17 00:00:00 2001 From: Elizabeth Perl Date: Tue, 28 Jul 2026 16:04:43 -0400 Subject: [PATCH 2/2] Reorder environmental data description and columns --- 13output.tex | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/13output.tex b/13output.tex index 66105276..eb63d96c 100644 --- a/13output.tex +++ b/13output.tex @@ -126,7 +126,7 @@ & & & \\ & & & \\ & & & \Bstrut\\ - 33 & ENVIRONMENTAL\_DATA & NA & The input values of environmental data are echoed here. Density-dependence can be used by linking to population quantities that have already been calculated at the start of the year. These include summary numbers, summary biomass, spawning biomass, and recruitment deviations. These quantities are mapped into the -1, -2, and -3 columns of the environmental data matrix where they can be used as if there were environmental data input. \Bstrut\\ + 33 & ENVIRONMENTAL\_DATA & NA & The input values of environmental data are echoed here. Density-dependence can be used by linking to population quantities that have already been calculated at the start of the year. These include spawning biomass, recruitment deviations, summary biomass, and summary numbers. These quantities are respectively mapped into the -1, -2, -3, and -4 columns of the environmental data matrix (see \hyperlink{EnvVar}{Environmental or Density Dependent Link and Variable section}) where they can be used as if there were environmental data input. \Bstrut\\ 34 & TAG\_Recapture & \multirow{1}{1cm}[-0.25cm]{\parbox{4cm}{\$tagrelease, \#tagsalive, \$tagtotrecap, \$tagfirstperiod, \$tagaccumperiod, and \$tagreportrates}} & \multirow{1}{1cm}[-0.25cm]{\parbox{9.5cm}{Multiple tables of information on tagged fish (if included in the model) including details on each tag group, tags alive by release group and period, total recaptures by release group and period, and reporting rates by fishery.}} \\ & \textit{Tag recapture information} & & \\ & & & \Bstrut\\