From 9e1d0f6e32a338f2bae0e5cfd80a161a1f79a12c Mon Sep 17 00:00:00 2001
From: Joar Gruneau <joar@gruneau.se>
Date: Mon, 1 Aug 2022 12:03:28 +0200
Subject: [PATCH] feature: analyze contested examples

---
 .../data/__init__.py                          |    1 +
 {{cookiecutter.repository_name}}/guild.yml    |   12 +
 .../operations/contested.py                   |   96 +
 .../operations/utilities/contested_display.py |   43 +
 {{cookiecutter.repository_name}}/poetry.lock  | 2840 ++++++++---------
 .../pyproject.toml                            |   12 +-
 .../model/prediction.py                       |   12 +-
 7 files changed, 1436 insertions(+), 1580 deletions(-)
 create mode 100644 {{cookiecutter.repository_name}}/operations/contested.py
 create mode 100644 {{cookiecutter.repository_name}}/operations/utilities/contested_display.py

diff --git a/{{cookiecutter.repository_name}}/data/__init__.py b/{{cookiecutter.repository_name}}/data/__init__.py
index f781e5e..d24d9f7 100644
--- a/{{cookiecutter.repository_name}}/data/__init__.py
+++ b/{{cookiecutter.repository_name}}/data/__init__.py
@@ -1,2 +1,3 @@
 from .example import Example
 from .datastreams import datastreams
+from .datasets import datasets
diff --git a/{{cookiecutter.repository_name}}/guild.yml b/{{cookiecutter.repository_name}}/guild.yml
index c3e3a9c..3a099b3 100644
--- a/{{cookiecutter.repository_name}}/guild.yml
+++ b/{{cookiecutter.repository_name}}/guild.yml
@@ -40,6 +40,15 @@
         - model
         - prepare
         - splits
+    contested:
+      main: operations.contested
+      flags-import: all
+      output-scalars: off
+      requires:
+        - model
+        - prepare
+        - splits
+        - contested_display
     jupyter:
       main: operations.jupyter
       flags-import: all
@@ -63,6 +72,9 @@
     splits:
       sources:
         - data/splits
+    contested_display:
+      sources:
+        - operations/utilities/contested_display.py
     notebooks:
       sources:
         - notebooks
diff --git a/{{cookiecutter.repository_name}}/operations/contested.py b/{{cookiecutter.repository_name}}/operations/contested.py
new file mode 100644
index 0000000..ea7a347
--- /dev/null
+++ b/{{cookiecutter.repository_name}}/operations/contested.py
@@ -0,0 +1,96 @@
+import argparse
+import json
+import os
+import sys
+from collections import defaultdict
+from pathlib import Path
+
+import lantern
+import torch
+import torch.utils.tensorboard
+from data import datasets
+from datastream import Datastream, samplers
+from streamlit import cli as stcli
+from tqdm import tqdm
+from {{cookiecutter.package_name}}.model import Model
+
+from . import utilities
+
+
+def evaluate(config):
+    torch.set_grad_enabled(False)
+    device = torch.device("cuda" if config["cuda"] else "cpu")
+
+    model = Model().to(device)
+
+    print("Loading model checkpoint")
+    model.load_state_dict(torch.load("model/model.pt"))
+    data = datasets()
+
+    datastreams = {
+        f"{split_name}": Datastream(dataset, samplers.SequentialSampler(len(dataset)))
+        for split_name, dataset in data.items()
+    }
+    evaluate_data_loaders = {
+        name: (
+            datastreams[name].data_loader(
+                batch_size=config["eval_batch_size"],
+                collate_fn=list,
+                num_workers=config["n_workers"],
+            )
+        )
+        for name, stream in datastreams.items()
+    }
+    losses = defaultdict(list)
+
+    for dataset_name, data_loader in evaluate_data_loaders.items():
+        print(f"Computing loss for dataset: {dataset_name}")
+        for examples in lantern.ProgressBar(data_loader, dataset_name):
+            with lantern.module_eval(model):
+                loss = (
+                    model.predictions([example.image for example in examples])
+                    .loss(examples, reduction="none")
+                    .cpu()
+                    .numpy()
+                    .tolist()
+                )
+                losses[dataset_name].extend(loss)
+
+    dataframes = {
+        dataset_name: dataset.dataframe.reset_index()
+        .assign(
+            dataset_index=range(len(losses[dataset_name])), loss=losses[dataset_name]
+        )
+        .sort_values(by=["loss"], ascending=False)
+        for dataset_name, dataset in data.items()
+    }
+
+    path = Path("contested")
+    path.mkdir()
+    for dataset_name, dataframe in dataframes.items():
+        dataframe[["image_path", "loss", "dataset_index", "class_name"]].to_csv(
+            path / f"{dataset_name}.csv", index=False
+        )
+
+
+if __name__ == "__main__":
+    print("Preparing datasets")
+    parser = argparse.ArgumentParser()
+    parser.add_argument("--eval_batch_size", type=int, default=64)
+    parser.add_argument("--n_workers", type=int, default=2)
+    parser.add_argument("--cuda", type=bool, choices=[True, False], default=True)
+    args = parser.parse_args()
+
+    config = vars(args)
+    config.update(
+        run_id=os.getenv("RUN_ID"),
+        **lantern.git_info(),
+    )
+
+    Path("config.json").write_text(json.dumps(config))
+
+    evaluate(config)
+
+    print("Running streamlit app")
+    sys.argv = ["streamlit", "run", "contested_display.py"]
+    sys.exit(stcli.main())
diff --git a/{{cookiecutter.repository_name}}/operations/utilities/contested_display.py b/{{cookiecutter.repository_name}}/operations/utilities/contested_display.py
new file mode 100644
index 0000000..47bcc9c
--- /dev/null
+++ b/{{cookiecutter.repository_name}}/operations/utilities/contested_display.py
@@ -0,0 +1,43 @@
+import operations
+import data
+import pandas as pd
+
+import streamlit as st
+
+st.set_page_config(layout="wide")
+
+
+def reset_index():
+    st.session_state.index = 0
+
+
+def next():
+    st.session_state.index = min(st.session_state.index + 1, len(dataframe))
+
+
+def previous():
+    st.session_state.index = max(st.session_state.index - 1, 0)
+
+
+datasets = data.datasets()
+option = st.selectbox("Select dataset", datasets.keys(), on_change=reset_index)
+dataframe = pd.read_csv(f"contested/{option}.csv")
+
+
+if "index" not in st.session_state:
+    reset_index()
+
+st.subheader(f"index: {st.session_state.index}")
+col1, col2, _, _ = st.columns([0.1, 0.17, 0.1, 0.63])
+col1.button("<- previous", on_click=previous)
+col2.button("next ->", on_click=next)
+row = dataframe.iloc[st.session_state.index]
+image = datasets[option][row["dataset_index"]].representation()
+
+st.image(image, width=1200)
+st.markdown(
+    dataframe[st.session_state.index : st.session_state.index + 1].to_html(
+        escape=False
+    ),
+    unsafe_allow_html=True,
+)
diff --git a/{{cookiecutter.repository_name}}/poetry.lock b/{{cookiecutter.repository_name}}/poetry.lock
index 87a6c81..828242d 100644
--- a/{{cookiecutter.repository_name}}/poetry.lock
+++ b/{{cookiecutter.repository_name}}/poetry.lock
@@ -1,13 +1,29 @@
 [[package]]
 name = "absl-py"
-version = "0.15.0"
+version = "1.2.0"
 description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py."
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
+
+[[package]]
+name = "altair"
+version = "4.2.0"
+description = "Altair: A declarative statistical visualization library for Python."
+category = "main"
+optional = false
+python-versions = ">=3.7"
 
 [package.dependencies]
-six = "*"
+entrypoints = "*"
+jinja2 = "*"
+jsonschema = ">=3.0"
+numpy = "*"
+pandas = ">=0.18"
+toolz = "*"
+
+[package.extras]
+dev = ["black", "docutils", "ipython", "flake8", "pytest", "sphinx", "mistune (<2.0.0)", "m2r", "vega-datasets", "recommonmark"]
 
 [[package]]
 name = "appdirs"
@@ -19,29 +35,42 @@ python-versions = "*"
 
 [[package]]
 name = "appnope"
-version = "0.1.2"
+version = "0.1.3"
 description = "Disable App Nap on macOS >= 10.9"
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
 [[package]]
 name = "astroid"
-version = "2.8.3"
+version = "2.11.7"
 description = "An abstract syntax tree for Python with inference support."
 category = "dev"
 optional = false
-python-versions = "~=3.6"
+python-versions = ">=3.6.2"
 
 [package.dependencies]
 lazy-object-proxy = ">=1.4.0"
-typed-ast = {version = ">=1.4.0,<1.5", markers = "implementation_name == \"cpython\" and python_version < \"3.8\""}
 typing-extensions = {version = ">=3.10", markers = "python_version < \"3.10\""}
-wrapt = ">=1.11,<1.14"
+wrapt = ">=1.11,<2"
+
+[[package]]
+name = "asttokens"
+version = "2.0.5"
+description = "Annotate AST trees with source code positions"
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+six = "*"
+
+[package.extras]
+test = ["astroid", "pytest"]
 
 [[package]]
 name = "atomicwrites"
-version = "1.4.0"
+version = "1.4.1"
 description = "Atomic file writes."
 category = "dev"
 optional = false
@@ -49,40 +78,51 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "attrs"
-version = "21.2.0"
+version = "22.1.0"
 description = "Classes Without Boilerplate"
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.5"
 
 [package.extras]
-dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"]
+dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"]
 docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
-tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"]
-tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"]
+tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "cloudpickle"]
+tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "cloudpickle"]
 
 [[package]]
 name = "backcall"
 version = "0.2.0"
 description = "Specifications for callback functions passed in to an API"
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
 [[package]]
-name = "backports.entry-points-selectable"
-version = "1.1.0"
-description = "Compatibility shim providing selectable entry points for older implementations"
-category = "dev"
+name = "backports.zoneinfo"
+version = "0.2.1"
+description = "Backport of the standard library zoneinfo module"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.extras]
+tzdata = ["tzdata"]
+
+[[package]]
+name = "beautifulsoup4"
+version = "4.11.1"
+description = "Screen-scraping library"
+category = "main"
 optional = false
-python-versions = ">=2.7"
+python-versions = ">=3.6.0"
 
 [package.dependencies]
-importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
+soupsieve = ">1.2"
 
 [package.extras]
-docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
-testing = ["pytest (>=4.6)", "pytest-flake8", "pytest-cov", "pytest-black (>=0.3.7)", "pytest-mypy", "pytest-checkdocs (>=2.4)", "pytest-enabler (>=1.0.1)"]
+html5lib = ["html5lib"]
+lxml = ["lxml"]
 
 [[package]]
 name = "black"
@@ -108,70 +148,49 @@ d = ["aiohttp (>=3.3.2)", "aiohttp-cors"]
 
 [[package]]
 name = "bleach"
-version = "4.1.0"
+version = "5.0.1"
 description = "An easy safelist-based HTML-sanitizing tool."
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
-packaging = "*"
 six = ">=1.9.0"
 webencodings = "*"
 
-[[package]]
-name = "boto3"
-version = "1.19.0"
-description = "The AWS SDK for Python"
-category = "dev"
-optional = false
-python-versions = ">= 3.6"
-
-[package.dependencies]
-botocore = ">=1.22.0,<1.23.0"
-jmespath = ">=0.7.1,<1.0.0"
-s3transfer = ">=0.5.0,<0.6.0"
-
 [package.extras]
-crt = ["botocore[crt] (>=1.21.0,<2.0a0)"]
+css = ["tinycss2 (>=1.1.0,<1.2)"]
+dev = ["build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "Sphinx (==4.3.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)", "black (==22.3.0)", "mypy (==0.961)"]
 
 [[package]]
-name = "botocore"
-version = "1.22.0"
-description = "Low-level, data-driven core of boto 3."
-category = "dev"
+name = "blinker"
+version = "1.5"
+description = "Fast, simple object-to-object and broadcast signaling"
+category = "main"
 optional = false
-python-versions = ">= 3.6"
-
-[package.dependencies]
-jmespath = ">=0.7.1,<1.0.0"
-python-dateutil = ">=2.1,<3.0.0"
-urllib3 = ">=1.25.4,<1.27"
-
-[package.extras]
-crt = ["awscrt (==0.12.5)"]
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "cachetools"
-version = "4.2.4"
+version = "5.2.0"
 description = "Extensible memoizing collections and decorators"
 category = "main"
 optional = false
-python-versions = "~=3.5"
+python-versions = "~=3.7"
 
 [[package]]
 name = "certifi"
-version = "2021.10.8"
+version = "2022.6.15"
 description = "Python package for providing Mozilla's CA Bundle."
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "cffi"
-version = "1.15.0"
+version = "1.15.1"
 description = "Foreign Function Interface for Python calling C code."
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
@@ -180,19 +199,19 @@ pycparser = "*"
 
 [[package]]
 name = "chardet"
-version = "4.0.0"
-description = "Universal encoding detector for Python 2 and 3"
+version = "5.0.0"
+description = "Universal encoding detector for Python 3"
 category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "charset-normalizer"
-version = "2.0.7"
+version = "2.1.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 category = "main"
 optional = false
-python-versions = ">=3.5.0"
+python-versions = ">=3.6.0"
 
 [package.extras]
 unicode_backport = ["unicodedata2"]
@@ -201,55 +220,50 @@ unicode_backport = ["unicodedata2"]
 name = "click"
 version = "7.1.2"
 description = "Composable command line interface toolkit"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "colorama"
-version = "0.4.4"
+version = "0.4.5"
 description = "Cross-platform colored terminal text."
 category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
-name = "cycler"
-version = "0.10.0"
-description = "Composable style cycles"
+name = "commonmark"
+version = "0.9.1"
+description = "Python parser for the CommonMark Markdown spec"
 category = "main"
 optional = false
 python-versions = "*"
 
-[package.dependencies]
-six = "*"
+[package.extras]
+test = ["hypothesis (==3.55.3)", "flake8 (==3.7.8)"]
 
 [[package]]
-name = "daemonize"
-version = "2.5.0"
-description = "Library to enable your code run as a daemon process on Unix-like systems."
-category = "dev"
+name = "cycler"
+version = "0.11.0"
+description = "Composable style cycles"
+category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
 
 [[package]]
-name = "data-kale"
-version = "0.1.3"
-description = "Simple Data Lake to sync data repositories to S3 compatible buckets."
+name = "daemonize"
+version = "2.5.0"
+description = "Library to enable your code run as a daemon process on Unix-like systems."
 category = "dev"
 optional = false
 python-versions = "*"
 
-[package.dependencies]
-boto3 = ">=1.12.18"
-toml = ">=0.10.0"
-tqdm = ">=4.43.0"
-
 [[package]]
 name = "decorator"
-version = "5.1.0"
+version = "5.1.1"
 description = "Decorators for Humans"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.5"
 
@@ -257,13 +271,24 @@ python-versions = ">=3.5"
 name = "defusedxml"
 version = "0.7.1"
 description = "XML bomb protection for Python stdlib modules"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
+[[package]]
+name = "dill"
+version = "0.3.5.1"
+description = "serialize all of python"
+category = "dev"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
+
+[package.extras]
+graph = ["objgraph (>=1.7.2)"]
+
 [[package]]
 name = "distlib"
-version = "0.3.3"
+version = "0.3.5"
 description = "Distribution utilities"
 category = "dev"
 optional = false
@@ -271,19 +296,38 @@ python-versions = "*"
 
 [[package]]
 name = "entrypoints"
-version = "0.3"
+version = "0.4"
 description = "Discover and load entry points from installed packages."
-category = "dev"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
+name = "executing"
+version = "0.9.1"
+description = "Get the currently executing AST node of a frame, and other information"
+category = "main"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "fastjsonschema"
+version = "2.16.1"
+description = "Fastest Python implementation of JSON schema"
+category = "main"
 optional = false
-python-versions = ">=2.7"
+python-versions = "*"
+
+[package.extras]
+devel = ["colorama", "jsonschema", "json-spec", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"]
 
 [[package]]
 name = "filelock"
-version = "3.3.1"
+version = "3.7.1"
 description = "A platform independent file lock."
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.extras]
 docs = ["furo (>=2021.8.17b43)", "sphinx (>=4.1)", "sphinx-autodoc-typehints (>=1.12)"]
@@ -298,26 +342,71 @@ optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 
 [package.dependencies]
-importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
 mccabe = ">=0.6.0,<0.7.0"
 pycodestyle = ">=2.7.0,<2.8.0"
 pyflakes = ">=2.3.0,<2.4.0"
 
+[[package]]
+name = "fonttools"
+version = "4.34.4"
+description = "Tools to manipulate font files"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.extras]
+all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "uharfbuzz (>=0.23.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"]
+graphite = ["lz4 (>=1.7.4.2)"]
+interpolatable = ["scipy", "munkres"]
+lxml = ["lxml (>=4.0,<5)"]
+pathops = ["skia-pathops (>=0.5.0)"]
+plot = ["matplotlib"]
+repacker = ["uharfbuzz (>=0.23.0)"]
+symfont = ["sympy"]
+type1 = ["xattr"]
+ufo = ["fs (>=2.2.0,<3)"]
+unicode = ["unicodedata2 (>=14.0.0)"]
+woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"]
+
+[[package]]
+name = "gitdb"
+version = "4.0.9"
+description = "Git Object Database"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+smmap = ">=3.0.1,<6"
+
+[[package]]
+name = "gitpython"
+version = "3.1.27"
+description = "GitPython is a python library used to interact with Git repositories"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+gitdb = ">=4.0.1,<5"
+
 [[package]]
 name = "google-auth"
-version = "2.3.0"
+version = "2.9.1"
 description = "Google Authentication Library"
 category = "main"
 optional = false
-python-versions = ">= 3.6"
+python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*"
 
 [package.dependencies]
-cachetools = ">=2.0.0,<5.0"
+cachetools = ">=2.0.0,<6.0"
 pyasn1-modules = ">=0.2.1"
-rsa = ">=3.1.4,<5"
+rsa = {version = ">=3.1.4,<5", markers = "python_version >= \"3.6\""}
+six = ">=1.9.0"
 
 [package.extras]
-aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)", "requests (>=2.20.0,<3.0.0dev)"]
+aiohttp = ["requests (>=2.20.0,<3.0.0dev)", "aiohttp (>=3.6.2,<4.0.0dev)"]
+enterprise_cert = ["cryptography (==36.0.2)", "pyopenssl (==22.0.0)"]
 pyopenssl = ["pyopenssl (>=20.0.0)"]
 reauth = ["pyu2f (>=0.1.5)"]
 
@@ -338,21 +427,21 @@ tool = ["click (>=6.0.0)"]
 
 [[package]]
 name = "grpcio"
-version = "1.41.0"
+version = "1.48.0"
 description = "HTTP/2-based RPC framework"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
 
 [package.dependencies]
 six = ">=1.5.2"
 
 [package.extras]
-protobuf = ["grpcio-tools (>=1.41.0)"]
+protobuf = ["grpcio-tools (>=1.48.0)"]
 
 [[package]]
 name = "guildai"
-version = "0.7.4"
+version = "0.8.0"
 description = "Experiment tracking, ML developer tools"
 category = "dev"
 optional = false
@@ -363,7 +452,7 @@ chardet = ">=3.0.4"
 click = ">=7.1.2,<8"
 daemonize = ">=2.4.7"
 filelock = ">=3.0.12"
-jinja2 = ">=2.10,<3"
+jinja2 = ">=3.0.3"
 natsort = "*"
 numpy = ">=1.16"
 Pillow = ">=5.0"
@@ -390,22 +479,32 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "imageio"
-version = "2.9.0"
+version = "2.21.0"
 description = "Library for reading and writing a wide range of image, video, scientific, and volumetric data formats."
 category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.7"
 
 [package.dependencies]
 numpy = "*"
-pillow = "*"
+pillow = ">=8.3.2"
 
 [package.extras]
-ffmpeg = ["imageio-ffmpeg"]
+all-plugins = ["astropy", "av", "imageio-ffmpeg", "opencv-python", "psutil", "tifffile"]
+all-plugins-pypy = ["av", "imageio-ffmpeg", "psutil", "tifffile"]
+build = ["wheel"]
+dev = ["invoke", "pytest", "pytest-cov", "fsspec", "black", "flake8"]
+docs = ["sphinx", "numpydoc", "pydata-sphinx-theme"]
+ffmpeg = ["imageio-ffmpeg", "psutil"]
 fits = ["astropy"]
-full = ["astropy", "gdal", "imageio-ffmpeg", "itk"]
+full = ["astropy", "av", "black", "flake8", "fsspec", "gdal", "imageio-ffmpeg", "invoke", "itk", "numpydoc", "opencv-python", "psutil", "pydata-sphinx-theme", "pytest", "pytest-cov", "sphinx", "tifffile", "wheel"]
 gdal = ["gdal"]
 itk = ["itk"]
+linting = ["black", "flake8"]
+opencv = ["opencv-python"]
+pyav = ["av"]
+test = ["invoke", "pytest", "pytest-cov", "fsspec"]
+tifffile = ["tifffile"]
 
 [[package]]
 name = "imgaug"
@@ -428,20 +527,34 @@ six = "*"
 
 [[package]]
 name = "importlib-metadata"
-version = "4.8.1"
+version = "4.12.0"
 description = "Read metadata from Python packages"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
-typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""}
 zipp = ">=0.5"
 
 [package.extras]
-docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
+docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"]
 perf = ["ipython"]
-testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]
+
+[[package]]
+name = "importlib-resources"
+version = "5.9.0"
+description = "Read resources from Python packages"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
+
+[package.extras]
+docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
 
 [[package]]
 name = "iniconfig"
@@ -455,7 +568,7 @@ python-versions = "*"
 name = "ipykernel"
 version = "5.5.6"
 description = "IPython Kernel for Jupyter"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.5"
 
@@ -472,11 +585,11 @@ test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "nose", "jedi (<=0.17.2)"]
 
 [[package]]
 name = "ipython"
-version = "7.28.0"
+version = "8.4.0"
 description = "IPython: Productive Interactive Computing"
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 
 [package.dependencies]
 appnope = {version = "*", markers = "sys_platform == \"darwin\""}
@@ -488,33 +601,36 @@ matplotlib-inline = "*"
 pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
 pickleshare = "*"
 prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0"
-pygments = "*"
-traitlets = ">=4.2"
+pygments = ">=2.4.0"
+stack-data = "*"
+traitlets = ">=5"
 
 [package.extras]
-all = ["Sphinx (>=1.3)", "ipykernel", "ipyparallel", "ipywidgets", "nbconvert", "nbformat", "nose (>=0.10.1)", "notebook", "numpy (>=1.17)", "pygments", "qtconsole", "requests", "testpath"]
+all = ["black", "Sphinx (>=1.3)", "ipykernel", "nbconvert", "nbformat", "ipywidgets", "notebook", "ipyparallel", "qtconsole", "pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "numpy (>=1.19)", "pandas", "trio"]
+black = ["black"]
 doc = ["Sphinx (>=1.3)"]
 kernel = ["ipykernel"]
 nbconvert = ["nbconvert"]
 nbformat = ["nbformat"]
-notebook = ["notebook", "ipywidgets"]
+notebook = ["ipywidgets", "notebook"]
 parallel = ["ipyparallel"]
 qtconsole = ["qtconsole"]
-test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.17)"]
+test = ["pytest (<7.1)", "pytest-asyncio", "testpath"]
+test_extra = ["pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "trio"]
 
 [[package]]
 name = "ipython-genutils"
 version = "0.2.0"
 description = "Vestigial utilities from IPython"
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
 [[package]]
 name = "ipywidgets"
-version = "7.6.5"
+version = "7.7.1"
 description = "IPython HTML widgets for Jupyter"
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
@@ -523,16 +639,15 @@ ipykernel = ">=4.5.1"
 ipython = {version = ">=4.0.0", markers = "python_version >= \"3.3\""}
 ipython-genutils = ">=0.2.0,<0.3.0"
 jupyterlab-widgets = {version = ">=1.0.0", markers = "python_version >= \"3.6\""}
-nbformat = ">=4.2.0"
 traitlets = ">=4.3.1"
-widgetsnbextension = ">=3.5.0,<3.6.0"
+widgetsnbextension = ">=3.6.0,<3.7.0"
 
 [package.extras]
 test = ["pytest (>=3.6.0)", "pytest-cov", "mock"]
 
 [[package]]
 name = "isort"
-version = "5.9.3"
+version = "5.10.1"
 description = "A Python utility / library to sort Python imports."
 category = "dev"
 optional = false
@@ -546,9 +661,9 @@ plugins = ["setuptools"]
 
 [[package]]
 name = "jedi"
-version = "0.18.0"
+version = "0.18.1"
 description = "An autocompletion tool for Python that can be used for text editors."
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 
@@ -557,29 +672,21 @@ parso = ">=0.8.0,<0.9.0"
 
 [package.extras]
 qa = ["flake8 (==3.8.3)", "mypy (==0.782)"]
-testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"]
+testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<7.0.0)"]
 
 [[package]]
 name = "jinja2"
-version = "2.11.3"
+version = "3.1.2"
 description = "A very fast and expressive template engine."
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.7"
 
 [package.dependencies]
-MarkupSafe = ">=0.23"
+MarkupSafe = ">=2.0"
 
 [package.extras]
-i18n = ["Babel (>=0.8)"]
-
-[[package]]
-name = "jmespath"
-version = "0.10.0"
-description = "JSON Matching Expressions"
-category = "dev"
-optional = false
-python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
+i18n = ["Babel (>=2.7)"]
 
 [[package]]
 name = "joblib"
@@ -591,45 +698,46 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "jsonschema"
-version = "4.1.2"
+version = "4.9.0"
 description = "An implementation of JSON Schema validation for Python"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.dependencies]
 attrs = ">=17.4.0"
-importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
+importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""}
 pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2"
 
 [package.extras]
 format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
-format_nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
+format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
 
 [[package]]
 name = "jupyter-client"
-version = "7.0.6"
+version = "7.3.4"
 description = "Jupyter protocol implementation and client libraries"
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.6.1"
+python-versions = ">=3.7"
 
 [package.dependencies]
 entrypoints = "*"
-jupyter-core = ">=4.6.0"
-nest-asyncio = ">=1.5"
-python-dateutil = ">=2.1"
-pyzmq = ">=13"
-tornado = ">=4.1"
+jupyter-core = ">=4.9.2"
+nest-asyncio = ">=1.5.4"
+python-dateutil = ">=2.8.2"
+pyzmq = ">=23.0"
+tornado = ">=6.0"
 traitlets = "*"
 
 [package.extras]
-doc = ["myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"]
-test = ["codecov", "coverage", "ipykernel", "ipython", "mock", "mypy", "pre-commit", "pytest", "pytest-asyncio", "pytest-cov", "pytest-timeout", "jedi (<0.18)"]
+doc = ["ipykernel", "myst-parser", "sphinx-rtd-theme", "sphinx (>=1.3.6)", "sphinxcontrib-github-alt"]
+test = ["codecov", "coverage", "ipykernel (>=6.5)", "ipython", "mypy", "pre-commit", "pytest", "pytest-asyncio (>=0.18)", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "jupyter-contrib-core"
-version = "0.3.3"
+version = "0.4.0"
 description = "Common utilities for jupyter-contrib projects."
 category = "dev"
 optional = false
@@ -642,7 +750,7 @@ tornado = "*"
 traitlets = "*"
 
 [package.extras]
-testing_utils = ["nose", "mock"]
+testing_utils = ["mock", "nose"]
 
 [[package]]
 name = "jupyter-contrib-nbextensions"
@@ -671,16 +779,19 @@ test = ["nbformat", "nose", "pip", "requests", "mock"]
 
 [[package]]
 name = "jupyter-core"
-version = "4.8.1"
+version = "4.11.1"
 description = "Jupyter core package. A base package on which Jupyter projects rely."
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""}
 traitlets = "*"
 
+[package.extras]
+test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
+
 [[package]]
 name = "jupyter-highlight-selected-word"
 version = "0.2.0"
@@ -725,26 +836,23 @@ test = ["jupyter-contrib-core", "nose", "requests", "selenium", "mock"]
 
 [[package]]
 name = "jupyterlab-pygments"
-version = "0.1.2"
+version = "0.2.2"
 description = "Pygments theme using JupyterLab CSS variables"
-category = "dev"
+category = "main"
 optional = false
-python-versions = "*"
-
-[package.dependencies]
-pygments = ">=2.4.1,<3"
+python-versions = ">=3.7"
 
 [[package]]
 name = "jupyterlab-widgets"
-version = "1.0.2"
+version = "1.1.1"
 description = "A JupyterLab extension."
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 
 [[package]]
 name = "kiwisolver"
-version = "1.3.2"
+version = "1.4.4"
 description = "A fast implementation of the Cassowary constraint solver"
 category = "main"
 optional = false
@@ -752,15 +860,15 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "lazy-object-proxy"
-version = "1.6.0"
+version = "1.7.1"
 description = "A fast and thorough lazy object proxy."
 category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "lxml"
-version = "4.6.3"
+version = "4.9.1"
 description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API."
 category = "dev"
 optional = false
@@ -774,29 +882,29 @@ source = ["Cython (>=0.29.7)"]
 
 [[package]]
 name = "markdown"
-version = "3.3.4"
+version = "3.4.1"
 description = "Python implementation of Markdown."
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
-importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
+importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
 
 [package.extras]
 testing = ["coverage", "pyyaml"]
 
 [[package]]
 name = "markupsafe"
-version = "2.0.1"
+version = "2.1.1"
 description = "Safely add untrusted strings to HTML/XML markup."
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "matplotlib"
-version = "3.4.3"
+version = "3.5.2"
 description = "Python plotting package"
 category = "main"
 optional = false
@@ -804,17 +912,20 @@ python-versions = ">=3.7"
 
 [package.dependencies]
 cycler = ">=0.10"
+fonttools = ">=4.22.0"
 kiwisolver = ">=1.0.1"
-numpy = ">=1.16"
+numpy = ">=1.17"
+packaging = ">=20.0"
 pillow = ">=6.2.0"
 pyparsing = ">=2.2.1"
 python-dateutil = ">=2.7"
+setuptools_scm = ">=4"
 
 [[package]]
 name = "matplotlib-inline"
 version = "0.1.3"
 description = "Inline Matplotlib backend for Jupyter"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.5"
 
@@ -833,7 +944,7 @@ python-versions = "*"
 name = "mistune"
 version = "0.8.4"
 description = "The fastest markdown parser in pure Python"
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
@@ -847,11 +958,11 @@ python-versions = "*"
 
 [[package]]
 name = "natsort"
-version = "7.1.1"
+version = "8.1.0"
 description = "Simple yet flexible natural sorting in Python."
 category = "dev"
 optional = false
-python-versions = ">=3.4"
+python-versions = ">=3.6"
 
 [package.extras]
 fast = ["fastnumbers (>=2.0.0)"]
@@ -859,99 +970,100 @@ icu = ["PyICU (>=1.0.0)"]
 
 [[package]]
 name = "nbclient"
-version = "0.5.4"
+version = "0.6.6"
 description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor."
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.6.1"
+python-versions = ">=3.7.0"
 
 [package.dependencies]
 jupyter-client = ">=6.1.5"
 nbformat = ">=5.0"
 nest-asyncio = "*"
-traitlets = ">=4.2"
+traitlets = ">=5.2.2"
 
 [package.extras]
-dev = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"]
-sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"]
-test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"]
+sphinx = ["autodoc-traits", "mock", "moto", "myst-parser", "Sphinx (>=1.7)", "sphinx-book-theme"]
+test = ["black", "check-manifest", "flake8", "ipykernel", "ipython (<8.0.0)", "ipywidgets (<8.0.0)", "mypy", "pip (>=18.1)", "pre-commit", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "setuptools (>=60.0)", "testpath", "twine (>=1.11.0)", "xmltodict"]
 
 [[package]]
 name = "nbconvert"
-version = "6.2.0"
+version = "6.5.0"
 description = "Converting Jupyter Notebooks"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.dependencies]
+beautifulsoup4 = "*"
 bleach = "*"
 defusedxml = "*"
 entrypoints = ">=0.2.2"
-jinja2 = ">=2.4"
-jupyter-core = "*"
+jinja2 = ">=3.0"
+jupyter-core = ">=4.7"
 jupyterlab-pygments = "*"
+MarkupSafe = ">=2.0"
 mistune = ">=0.8.1,<2"
-nbclient = ">=0.5.0,<0.6.0"
-nbformat = ">=4.4"
+nbclient = ">=0.5.0"
+nbformat = ">=5.1"
+packaging = "*"
 pandocfilters = ">=1.4.1"
 pygments = ">=2.4.1"
-testpath = "*"
+tinycss2 = "*"
 traitlets = ">=5.0"
 
 [package.extras]
-all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.6)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"]
+all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pre-commit", "pyppeteer (>=1,<1.1)", "tornado (>=6.1)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"]
 docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"]
-serve = ["tornado (>=4.0)"]
-test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.6)"]
-webpdf = ["pyppeteer (==0.2.6)"]
+serve = ["tornado (>=6.1)"]
+test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pre-commit", "pyppeteer (>=1,<1.1)"]
+webpdf = ["pyppeteer (>=1,<1.1)"]
 
 [[package]]
 name = "nbformat"
-version = "5.1.3"
+version = "5.4.0"
 description = "The Jupyter Notebook format"
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.7"
 
 [package.dependencies]
-ipython-genutils = "*"
-jsonschema = ">=2.4,<2.5.0 || >2.5.0"
+fastjsonschema = "*"
+jsonschema = ">=2.6"
 jupyter-core = "*"
-traitlets = ">=4.1"
+traitlets = ">=5.1"
 
 [package.extras]
-fast = ["fastjsonschema"]
-test = ["check-manifest", "fastjsonschema", "testpath", "pytest", "pytest-cov"]
+test = ["check-manifest", "testpath", "pytest", "pre-commit"]
 
 [[package]]
 name = "nest-asyncio"
-version = "1.5.1"
+version = "1.5.5"
 description = "Patch asyncio to allow nested event loops"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.5"
 
 [[package]]
 name = "networkx"
-version = "2.6.3"
+version = "2.8.5"
 description = "Python package for creating and manipulating graphs and networks"
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 
 [package.extras]
-default = ["numpy (>=1.19)", "scipy (>=1.5,!=1.6.1)", "matplotlib (>=3.3)", "pandas (>=1.1)"]
-developer = ["black (==21.5b1)", "pre-commit (>=2.12)"]
-doc = ["sphinx (>=4.0,<5.0)", "pydata-sphinx-theme (>=0.6,<1.0)", "sphinx-gallery (>=0.9,<1.0)", "numpydoc (>=1.1)", "pillow (>=8.2)", "nb2plots (>=0.6)", "texext (>=0.6.6)"]
-extra = ["lxml (>=4.5)", "pygraphviz (>=1.7)", "pydot (>=1.4.1)"]
-test = ["pytest (>=6.2)", "pytest-cov (>=2.12)", "codecov (>=2.1)"]
+default = ["numpy (>=1.19)", "scipy (>=1.8)", "matplotlib (>=3.4)", "pandas (>=1.3)"]
+developer = ["pre-commit (>=2.19)", "mypy (>=0.960)"]
+doc = ["sphinx (>=5)", "pydata-sphinx-theme (>=0.9)", "sphinx-gallery (>=0.10)", "numpydoc (>=1.4)", "pillow (>=9.1)", "nb2plots (>=0.6)", "texext (>=0.6.6)"]
+extra = ["lxml (>=4.6)", "pygraphviz (>=1.9)", "pydot (>=1.4.2)", "sympy (>=1.10)"]
+test = ["pytest (>=7.1)", "pytest-cov (>=3.0)", "codecov (>=2.1)"]
 
 [[package]]
 name = "notebook"
 version = "5.7.8"
 description = "A web-based notebook environment for interactive computing"
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
@@ -975,76 +1087,86 @@ test = ["nose", "coverage", "requests", "nose-warnings-filters", "nbval", "nose-
 
 [[package]]
 name = "numpy"
-version = "1.21.1"
+version = "1.23.1"
 description = "NumPy is the fundamental package for array computing with Python."
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 
 [[package]]
 name = "oauthlib"
-version = "3.1.1"
+version = "3.2.0"
 description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic"
 category = "main"
 optional = false
 python-versions = ">=3.6"
 
 [package.extras]
-rsa = ["cryptography (>=3.0.0,<4)"]
+rsa = ["cryptography (>=3.0.0)"]
 signals = ["blinker (>=1.4.0)"]
-signedtoken = ["cryptography (>=3.0.0,<4)", "pyjwt (>=2.0.0,<3)"]
+signedtoken = ["cryptography (>=3.0.0)", "pyjwt (>=2.0.0,<3)"]
 
 [[package]]
 name = "opencv-python"
-version = "4.5.3.56"
+version = "4.6.0.66"
 description = "Wrapper package for OpenCV python bindings."
 category = "main"
 optional = false
 python-versions = ">=3.6"
 
 [package.dependencies]
-numpy = ">=1.21.0"
+numpy = [
+    {version = ">=1.21.2", markers = "python_version >= \"3.10\" or python_version >= \"3.6\" and platform_system == \"Darwin\" and platform_machine == \"arm64\""},
+    {version = ">=1.19.3", markers = "python_version >= \"3.6\" and platform_system == \"Linux\" and platform_machine == \"aarch64\" or python_version >= \"3.9\""},
+    {version = ">=1.14.5", markers = "python_version >= \"3.7\""},
+    {version = ">=1.17.3", markers = "python_version >= \"3.8\""},
+]
 
 [[package]]
 name = "packaging"
-version = "21.0"
+version = "21.3"
 description = "Core utilities for Python packages"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 
 [package.dependencies]
-pyparsing = ">=2.0.2"
+pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
 
 [[package]]
 name = "pandas"
-version = "1.1.5"
+version = "1.4.3"
 description = "Powerful data structures for data analysis, time series, and statistics"
 category = "main"
 optional = false
-python-versions = ">=3.6.1"
+python-versions = ">=3.8"
 
 [package.dependencies]
-numpy = ">=1.15.4"
-python-dateutil = ">=2.7.3"
-pytz = ">=2017.2"
+numpy = [
+    {version = ">=1.18.5", markers = "platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\""},
+    {version = ">=1.19.2", markers = "platform_machine == \"aarch64\" and python_version < \"3.10\""},
+    {version = ">=1.20.0", markers = "platform_machine == \"arm64\" and python_version < \"3.10\""},
+    {version = ">=1.21.0", markers = "python_version >= \"3.10\""},
+]
+python-dateutil = ">=2.8.1"
+pytz = ">=2020.1"
 
 [package.extras]
-test = ["pytest (>=4.0.2)", "pytest-xdist", "hypothesis (>=3.58)"]
+test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"]
 
 [[package]]
 name = "pandocfilters"
 version = "1.5.0"
 description = "Utilities for writing pandoc filters in python"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "parso"
-version = "0.8.2"
+version = "0.8.3"
 description = "A Python Parser"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 
@@ -1072,7 +1194,7 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 name = "pexpect"
 version = "4.8.0"
 description = "Pexpect allows easy control of interactive console applications."
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
@@ -1083,40 +1205,52 @@ ptyprocess = ">=0.5"
 name = "pickleshare"
 version = "0.7.5"
 description = "Tiny 'shelve'-like database with concurrency support"
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
 [[package]]
 name = "pillow"
-version = "8.4.0"
+version = "9.2.0"
 description = "Python Imaging Library (Fork)"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
+
+[package.extras]
+docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinxext-opengraph"]
+tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "pkginfo"
-version = "1.7.1"
+version = "1.8.3"
 description = "Query metadatdata from sdists / bdists / installed packages."
 category = "dev"
 optional = false
-python-versions = "*"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 
 [package.extras]
 testing = ["nose", "coverage"]
 
+[[package]]
+name = "pkgutil-resolve-name"
+version = "1.3.10"
+description = "Resolve a name to an object."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
 [[package]]
 name = "platformdirs"
-version = "2.4.0"
+version = "2.5.2"
 description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.extras]
-docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"]
-test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"]
+docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"]
+test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"]
 
 [[package]]
 name = "pluggy"
@@ -1126,9 +1260,6 @@ category = "dev"
 optional = false
 python-versions = ">=3.6"
 
-[package.dependencies]
-importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""}
-
 [package.extras]
 dev = ["pre-commit", "tox"]
 testing = ["pytest", "pytest-benchmark"]
@@ -1147,20 +1278,20 @@ tomlkit = ">=0.6.0,<1.0.0"
 
 [[package]]
 name = "prometheus-client"
-version = "0.11.0"
+version = "0.14.1"
 description = "Python client for the Prometheus monitoring system."
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=3.6"
 
 [package.extras]
 twisted = ["twisted"]
 
 [[package]]
 name = "prompt-toolkit"
-version = "3.0.20"
+version = "3.0.30"
 description = "Library for building powerful interactive command lines in Python"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.6.2"
 
@@ -1169,7 +1300,7 @@ wcwidth = "*"
 
 [[package]]
 name = "protobuf"
-version = "3.19.0"
+version = "3.19.4"
 description = "Protocol Buffers"
 category = "main"
 optional = false
@@ -1177,30 +1308,41 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "psutil"
-version = "5.8.0"
+version = "5.9.1"
 description = "Cross-platform lib for process and system monitoring in Python."
 category = "dev"
 optional = false
-python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [package.extras]
-test = ["ipaddress", "mock", "unittest2", "enum34", "pywin32", "wmi"]
+test = ["ipaddress", "mock", "enum34", "pywin32", "wmi"]
 
 [[package]]
 name = "ptyprocess"
 version = "0.7.0"
 description = "Run a subprocess in a pseudo terminal"
-category = "dev"
+category = "main"
+optional = false
+python-versions = "*"
+
+[[package]]
+name = "pure-eval"
+version = "0.2.2"
+description = "Safely evaluate AST nodes without side effects"
+category = "main"
 optional = false
 python-versions = "*"
 
+[package.extras]
+tests = ["pytest"]
+
 [[package]]
 name = "py"
-version = "1.10.0"
+version = "1.11.0"
 description = "library with cross-python path, ini-parsing, io, code, log facilities"
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "pyaml"
@@ -1213,6 +1355,17 @@ python-versions = "*"
 [package.dependencies]
 PyYAML = "*"
 
+[[package]]
+name = "pyarrow"
+version = "8.0.0"
+description = "Python library for Apache Arrow"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+numpy = ">=1.16.6"
+
 [[package]]
 name = "pyasn1"
 version = "0.4.8"
@@ -1242,16 +1395,16 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "pycparser"
-version = "2.20"
+version = "2.21"
 description = "C parser in Python"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "pydantic"
-version = "1.8.2"
-description = "Data validation and settings management using python 3.6 type hinting"
+version = "1.9.1"
+description = "Data validation and settings management using python type hints"
 category = "main"
 optional = false
 python-versions = ">=3.6.1"
@@ -1263,6 +1416,24 @@ typing-extensions = ">=3.7.4.3"
 dotenv = ["python-dotenv (>=0.10.4)"]
 email = ["email-validator (>=1.0.3)"]
 
+[[package]]
+name = "pydeck"
+version = "0.7.1"
+description = "Widget for deck.gl maps"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+ipykernel = {version = ">=5.1.2", markers = "python_version >= \"3.4\""}
+ipywidgets = ">=7.0.0"
+jinja2 = ">=2.10.1"
+numpy = ">=1.16.4"
+traitlets = ">=4.3.2"
+
+[package.extras]
+testing = ["pytest"]
+
 [[package]]
 name = "pyflakes"
 version = "2.3.1"
@@ -1273,44 +1444,61 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "pygments"
-version = "2.10.0"
+version = "2.12.0"
 description = "Pygments is a syntax highlighting package written in Python."
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.6"
 
 [[package]]
 name = "pylint"
-version = "2.11.1"
+version = "2.14.5"
 description = "python code static checker"
 category = "dev"
 optional = false
-python-versions = "~=3.6"
+python-versions = ">=3.7.2"
 
 [package.dependencies]
-astroid = ">=2.8.0,<2.9"
-colorama = {version = "*", markers = "sys_platform == \"win32\""}
+astroid = ">=2.11.6,<=2.12.0-dev0"
+colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""}
+dill = ">=0.2"
 isort = ">=4.2.5,<6"
-mccabe = ">=0.6,<0.7"
+mccabe = ">=0.6,<0.8"
 platformdirs = ">=2.2.0"
-toml = ">=0.7.1"
+tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
+tomlkit = ">=0.10.1"
 typing-extensions = {version = ">=3.10.0", markers = "python_version < \"3.10\""}
 
+[package.extras]
+spelling = ["pyenchant (>=3.2,<4.0)"]
+testutils = ["gitpython (>3)"]
+
+[[package]]
+name = "pympler"
+version = "1.0.1"
+description = "A development tool to measure, monitor and analyze the memory behavior of Python objects."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
 [[package]]
 name = "pyparsing"
-version = "2.4.7"
-description = "Python parsing module"
+version = "3.0.9"
+description = "pyparsing module - Classes and methods to define and execute parsing grammars"
 category = "main"
 optional = false
-python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
+python-versions = ">=3.6.8"
+
+[package.extras]
+diagrams = ["railroad-diagrams", "jinja2"]
 
 [[package]]
 name = "pyrsistent"
-version = "0.18.0"
+version = "0.18.1"
 description = "Persistent/Functional/Immutable data structures"
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "pytest"
@@ -1324,7 +1512,6 @@ python-versions = ">=3.6"
 atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""}
 attrs = ">=19.2.0"
 colorama = {version = "*", markers = "sys_platform == \"win32\""}
-importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""}
 iniconfig = "*"
 packaging = "*"
 pluggy = ">=0.12,<2.0"
@@ -1347,7 +1534,7 @@ six = ">=1.5"
 
 [[package]]
 name = "pytorch-datastream"
-version = "0.4.5"
+version = "0.4.6"
 description = "Simple dataset to dataloader library for pytorch"
 category = "main"
 optional = false
@@ -1361,7 +1548,7 @@ torch = {version = ">=1.4", markers = "python_version > \"3.6\""}
 
 [[package]]
 name = "pytorch-lantern"
-version = "0.12.0"
+version = "0.12.1"
 description = "Pytorch project template and related tools"
 category = "main"
 optional = false
@@ -1378,38 +1565,50 @@ tqdm = ">=4.51.0,<5.0.0"
 
 [[package]]
 name = "pytz"
-version = "2021.3"
+version = "2022.1"
 description = "World timezone definitions, modern and historical"
 category = "main"
 optional = false
 python-versions = "*"
 
+[[package]]
+name = "pytz-deprecation-shim"
+version = "0.1.0.post0"
+description = "Shims to make deprecation of pytz easier"
+category = "main"
+optional = false
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
+
+[package.dependencies]
+"backports.zoneinfo" = {version = "*", markers = "python_version >= \"3.6\" and python_version < \"3.9\""}
+tzdata = {version = "*", markers = "python_version >= \"3.6\""}
+
 [[package]]
 name = "pywavelets"
-version = "1.1.1"
+version = "1.3.0"
 description = "PyWavelets, wavelet transform module"
 category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.7"
 
 [package.dependencies]
-numpy = ">=1.13.3"
+numpy = ">=1.17.3"
 
 [[package]]
 name = "pywin32"
-version = "302"
+version = "304"
 description = "Python for Window Extensions"
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
 [[package]]
 name = "pywinpty"
-version = "1.1.4"
+version = "2.0.6"
 description = "Pseudo terminal support for Windows from Python."
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "pyyaml"
@@ -1421,9 +1620,9 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "pyzmq"
-version = "22.3.0"
+version = "23.2.0"
 description = "Python bindings for 0MQ"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 
@@ -1433,33 +1632,33 @@ py = {version = "*", markers = "implementation_name == \"pypy\""}
 
 [[package]]
 name = "regex"
-version = "2021.10.21"
+version = "2022.7.25"
 description = "Alternative regular expression module, to replace re."
 category = "dev"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "requests"
-version = "2.26.0"
+version = "2.28.1"
 description = "Python HTTP for Humans."
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+python-versions = ">=3.7, <4"
 
 [package.dependencies]
 certifi = ">=2017.4.17"
-charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""}
-idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""}
+charset-normalizer = ">=2,<3"
+idna = ">=2.5,<4"
 urllib3 = ">=1.21.1,<1.27"
 
 [package.extras]
-socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"]
-use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"]
+socks = ["PySocks (>=1.5.6,!=1.5.7)"]
+use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"]
 
 [[package]]
 name = "requests-oauthlib"
-version = "1.3.0"
+version = "1.3.1"
 description = "OAuthlib authentication support for Requests."
 category = "main"
 optional = false
@@ -1473,73 +1672,75 @@ requests = ">=2.0.0"
 rsa = ["oauthlib[signedtoken] (>=3.0.0)"]
 
 [[package]]
-name = "rsa"
-version = "4.7.2"
-description = "Pure-Python RSA implementation"
+name = "rich"
+version = "12.5.1"
+description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
 category = "main"
 optional = false
-python-versions = ">=3.5, <4"
+python-versions = ">=3.6.3,<4.0.0"
 
 [package.dependencies]
-pyasn1 = ">=0.1.3"
+commonmark = ">=0.9.0,<0.10.0"
+pygments = ">=2.6.0,<3.0.0"
+typing-extensions = {version = ">=4.0.0,<5.0", markers = "python_version < \"3.9\""}
+
+[package.extras]
+jupyter = ["ipywidgets (>=7.5.1,<8.0.0)"]
 
 [[package]]
-name = "s3transfer"
-version = "0.5.0"
-description = "An Amazon S3 Transfer Manager"
-category = "dev"
+name = "rsa"
+version = "4.9"
+description = "Pure-Python RSA implementation"
+category = "main"
 optional = false
-python-versions = ">= 3.6"
+python-versions = ">=3.6,<4"
 
 [package.dependencies]
-botocore = ">=1.12.36,<2.0a.0"
-
-[package.extras]
-crt = ["botocore[crt] (>=1.20.29,<2.0a.0)"]
+pyasn1 = ">=0.1.3"
 
 [[package]]
 name = "scikit-image"
-version = "0.18.3"
+version = "0.19.3"
 description = "Image processing in Python"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.dependencies]
-imageio = ">=2.3.0"
-matplotlib = ">=2.0.0,<3.0.0 || >3.0.0"
-networkx = ">=2.0"
-numpy = ">=1.16.5"
-pillow = ">=4.3.0,<7.1.0 || >7.1.0,<7.1.1 || >7.1.1"
+imageio = ">=2.4.1"
+networkx = ">=2.2"
+numpy = ">=1.17.0"
+packaging = ">=20.0"
+pillow = ">=6.1.0,<7.1.0 || >7.1.0,<7.1.1 || >7.1.1,<8.3.0 || >8.3.0"
 PyWavelets = ">=1.1.1"
-scipy = ">=1.0.1"
+scipy = ">=1.4.1"
 tifffile = ">=2019.7.26"
 
 [package.extras]
 data = ["pooch (>=1.3.0)"]
-docs = ["sphinx (>=1.8,<=2.4.4)", "sphinx-gallery (>=0.7.0,!=0.8.0)", "numpydoc (>=1.0)", "sphinx-copybutton", "pytest-runner", "scikit-learn", "matplotlib (>=3.0.1)", "dask[array] (>=0.15.0,!=2.17.0)", "cloudpickle (>=0.2.1)", "pandas (>=0.23.0)", "seaborn (>=0.7.1)", "pooch (>=1.3.0)", "tifffile (>=2020.5.30)", "myst-parser", "ipywidgets", "plotly (>=4.10.0)"]
-optional = ["simpleitk", "astropy (>=3.1.2)", "qtpy", "pyamg", "dask[array] (>=1.0.0,!=2.17.0)", "cloudpickle (>=0.2.1)", "pooch (>=1.3.0)"]
-test = ["pytest (>=5.2.0)", "pytest-cov (>=2.7.0)", "pytest-localserver", "pytest-faulthandler", "flake8", "codecov", "pooch (>=1.3.0)"]
+docs = ["sphinx (>=1.8)", "sphinx-gallery (>=0.10.1)", "numpydoc (>=1.0)", "sphinx-copybutton", "pytest-runner", "scikit-learn", "matplotlib (>=3.3)", "dask[array] (>=0.15.0,!=2.17.0)", "cloudpickle (>=0.2.1)", "pandas (>=0.23.0)", "seaborn (>=0.7.1)", "pooch (>=1.3.0)", "tifffile (>=2020.5.30)", "myst-parser", "ipywidgets", "plotly (>=4.14.0)", "kaleido"]
+optional = ["simpleitk", "astropy (>=3.1.2)", "cloudpickle (>=0.2.1)", "dask[array] (>=1.0.0,!=2.17.0)", "matplotlib (>=3.0.3)", "pooch (>=1.3.0)", "pyamg", "qtpy"]
+test = ["asv", "codecov", "flake8", "matplotlib (>=3.0.3)", "pooch (>=1.3.0)", "pytest (>=5.2.0)", "pytest-cov (>=2.7.0)", "pytest-localserver", "pytest-faulthandler"]
 
 [[package]]
 name = "scikit-learn"
-version = "1.0"
+version = "1.1.1"
 description = "A set of python modules for machine learning and data mining"
 category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 
 [package.dependencies]
-joblib = ">=0.11"
-numpy = ">=1.14.6"
-scipy = ">=1.1.0"
+joblib = ">=1.0.0"
+numpy = ">=1.17.3"
+scipy = ">=1.3.2"
 threadpoolctl = ">=2.0.0"
 
 [package.extras]
-benchmark = ["matplotlib (>=2.2.2)", "pandas (>=0.25.0)", "memory-profiler (>=0.57.0)"]
-docs = ["matplotlib (>=2.2.2)", "scikit-image (>=0.14.5)", "pandas (>=0.25.0)", "seaborn (>=0.9.0)", "memory-profiler (>=0.57.0)", "sphinx (>=4.0.1)", "sphinx-gallery (>=0.7.0)", "numpydoc (>=1.0.0)", "Pillow (>=7.1.2)", "sphinx-prompt (>=1.3.0)", "sphinxext-opengraph (>=0.4.2)"]
-examples = ["matplotlib (>=2.2.2)", "scikit-image (>=0.14.5)", "pandas (>=0.25.0)", "seaborn (>=0.9.0)"]
-tests = ["matplotlib (>=2.2.2)", "scikit-image (>=0.14.5)", "pandas (>=0.25.0)", "pytest (>=5.0.1)", "pytest-cov (>=2.9.0)", "flake8 (>=3.8.2)", "black (>=21.6b0)", "mypy (>=0.770)", "pyamg (>=4.0.0)"]
+tests = ["numpydoc (>=1.2.0)", "pyamg (>=4.0.0)", "mypy (>=0.770)", "black (>=22.3.0)", "flake8 (>=3.8.2)", "pytest-cov (>=2.9.0)", "pytest (>=5.0.1)", "pandas (>=1.0.5)", "scikit-image (>=0.14.5)", "matplotlib (>=3.1.2)"]
+examples = ["seaborn (>=0.9.0)", "pandas (>=1.0.5)", "scikit-image (>=0.14.5)", "matplotlib (>=3.1.2)"]
+docs = ["sphinxext-opengraph (>=0.4.2)", "sphinx-prompt (>=1.3.0)", "Pillow (>=7.1.2)", "numpydoc (>=1.2.0)", "sphinx-gallery (>=0.7.0)", "sphinx (>=4.0.1)", "memory-profiler (>=0.57.0)", "seaborn (>=0.9.0)", "pandas (>=1.0.5)", "scikit-image (>=0.14.5)", "matplotlib (>=3.1.2)"]
+benchmark = ["memory-profiler (>=0.57.0)", "pandas (>=1.0.5)", "matplotlib (>=3.1.2)"]
 
 [[package]]
 name = "scikit-optimize"
@@ -1570,11 +1771,19 @@ python-versions = ">=3.7"
 [package.dependencies]
 numpy = ">=1.16.5"
 
+[[package]]
+name = "semver"
+version = "2.13.0"
+description = "Python helper for Semantic Versioning (http://semver.org/)"
+category = "main"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+
 [[package]]
 name = "send2trash"
 version = "1.8.0"
 description = "Send file to trash natively under Mac OS X, Windows and Linux."
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
@@ -1583,16 +1792,33 @@ nativelib = ["pyobjc-framework-cocoa", "pywin32"]
 objc = ["pyobjc-framework-cocoa"]
 win32 = ["pywin32"]
 
+[[package]]
+name = "setuptools-scm"
+version = "7.0.5"
+description = "the blessed package to manage your versions by scm tags"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+packaging = ">=20.0"
+tomli = ">=1.0.0"
+typing-extensions = "*"
+
+[package.extras]
+test = ["pytest (>=6.2)", "virtualenv (>20)"]
+toml = ["setuptools (>=42)"]
+
 [[package]]
 name = "shapely"
-version = "1.7.1"
+version = "1.8.2"
 description = "Geometric objects, predicates, and operations"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
 
 [package.extras]
-all = ["numpy", "pytest", "pytest-cov"]
+all = ["pytest", "pytest-cov", "numpy"]
 test = ["pytest", "pytest-cov"]
 vectorized = ["numpy"]
 
@@ -1604,6 +1830,73 @@ category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 
+[[package]]
+name = "smmap"
+version = "5.0.0"
+description = "A pure Python implementation of a sliding window memory map manager"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
+name = "soupsieve"
+version = "2.3.2.post1"
+description = "A modern CSS selector implementation for Beautiful Soup."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
+name = "stack-data"
+version = "0.3.0"
+description = "Extract data from python stack frames and tracebacks for informative displays"
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+asttokens = "*"
+executing = "*"
+pure-eval = "*"
+
+[package.extras]
+tests = ["cython", "littleutils", "pygments", "typeguard", "pytest"]
+
+[[package]]
+name = "streamlit"
+version = "1.11.1"
+description = "The fastest way to build data apps in Python"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+altair = ">=3.2.0"
+attrs = ">=16.0.0"
+blinker = ">=1.0.0"
+cachetools = ">=4.0"
+click = ">=7.0"
+gitpython = "!=3.1.19"
+importlib-metadata = ">=1.4"
+numpy = "*"
+packaging = ">=14.1"
+pandas = ">=0.21.0"
+pillow = ">=6.2.0"
+protobuf = ">=3.12,<4"
+pyarrow = ">=4.0"
+pydeck = ">=0.1.dev5"
+pympler = ">=0.9"
+python-dateutil = "*"
+requests = ">=2.4"
+rich = ">=10.11.0"
+semver = "*"
+toml = "*"
+tornado = ">=5.0"
+typing-extensions = ">=3.10.0.0"
+tzlocal = ">=1.1"
+validators = ">=0.2"
+watchdog = {version = "*", markers = "platform_system != \"Darwin\""}
+
 [[package]]
 name = "tabview"
 version = "1.4.4"
@@ -1614,7 +1907,7 @@ python-versions = "*"
 
 [[package]]
 name = "tensorboard"
-version = "2.7.0"
+version = "2.9.1"
 description = "TensorBoard lets you watch Tensors Flow"
 category = "main"
 optional = false
@@ -1627,11 +1920,11 @@ google-auth-oauthlib = ">=0.4.1,<0.5"
 grpcio = ">=1.24.3"
 markdown = ">=2.6.8"
 numpy = ">=1.12.0"
-protobuf = ">=3.6.0"
+protobuf = ">=3.9.2,<3.20"
 requests = ">=2.21.0,<3"
 tensorboard-data-server = ">=0.6.0,<0.7.0"
 tensorboard-plugin-wit = ">=1.6.0"
-werkzeug = ">=0.11.15"
+werkzeug = ">=1.0.1"
 
 [[package]]
 name = "tensorboard-data-server"
@@ -1643,7 +1936,7 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "tensorboard-plugin-wit"
-version = "1.8.0"
+version = "1.8.1"
 description = "What-If Tool TensorBoard plugin."
 category = "main"
 optional = false
@@ -1651,34 +1944,23 @@ python-versions = "*"
 
 [[package]]
 name = "terminado"
-version = "0.12.1"
+version = "0.15.0"
 description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library."
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 ptyprocess = {version = "*", markers = "os_name != \"nt\""}
 pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""}
-tornado = ">=4"
-
-[package.extras]
-test = ["pytest"]
-
-[[package]]
-name = "testpath"
-version = "0.5.0"
-description = "Test utilities for code working with files and commands"
-category = "dev"
-optional = false
-python-versions = ">= 3.5"
+tornado = ">=6.1.0"
 
 [package.extras]
-test = ["pytest", "pathlib2"]
+test = ["pre-commit", "pytest-timeout", "pytest (>=6.0)"]
 
 [[package]]
 name = "threadpoolctl"
-version = "3.0.0"
+version = "3.1.0"
 description = "threadpoolctl"
 category = "dev"
 optional = false
@@ -1686,73 +1968,105 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "tifffile"
-version = "2021.10.12"
+version = "2022.7.31"
 description = "Read and write TIFF files"
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 
 [package.dependencies]
-numpy = ">=1.15.1"
+numpy = ">=1.19.2"
 
 [package.extras]
-all = ["imagecodecs (>=2021.7.30)", "matplotlib (>=3.2)", "lxml"]
+all = ["imagecodecs (>=2022.2.22)", "matplotlib (>=3.3)", "lxml"]
+
+[[package]]
+name = "tinycss2"
+version = "1.1.1"
+description = "A tiny CSS parser"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+webencodings = ">=0.4"
+
+[package.extras]
+test = ["coverage", "pytest-isort", "pytest-flake8", "pytest-cov", "pytest"]
+doc = ["sphinx-rtd-theme", "sphinx"]
 
 [[package]]
 name = "toml"
 version = "0.10.2"
 description = "Python Library for Tom's Obvious, Minimal Language"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 
+[[package]]
+name = "tomli"
+version = "2.0.1"
+description = "A lil' TOML parser"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
 [[package]]
 name = "tomlkit"
-version = "0.7.2"
+version = "0.11.1"
 description = "Style preserving TOML library"
 category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.6,<4.0"
+
+[[package]]
+name = "toolz"
+version = "0.12.0"
+description = "List processing tools and functional utilities"
+category = "main"
+optional = false
+python-versions = ">=3.5"
 
 [[package]]
 name = "torch"
-version = "1.7.1"
+version = "1.12.0"
 description = "Tensors and Dynamic neural networks in Python with strong GPU acceleration"
 category = "main"
 optional = false
-python-versions = ">=3.6.2"
+python-versions = ">=3.7.0"
 
 [package.dependencies]
-numpy = "*"
 typing-extensions = "*"
 
 [[package]]
 name = "torchvision"
-version = "0.8.2"
+version = "0.13.0"
 description = "image and video datasets and models for torch deep learning"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.7"
 
 [package.dependencies]
 numpy = "*"
-pillow = ">=4.1.1"
-torch = "1.7.1"
+pillow = ">=5.3.0,<8.3.0 || >=8.4.0"
+requests = "*"
+torch = "1.12.0"
+typing-extensions = "*"
 
 [package.extras]
 scipy = ["scipy"]
 
 [[package]]
 name = "tornado"
-version = "6.1"
+version = "6.2"
 description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">= 3.5"
+python-versions = ">= 3.7"
 
 [[package]]
 name = "tqdm"
-version = "4.62.3"
+version = "4.64.0"
 description = "Fast, Extensible Progress Meter"
 category = "main"
 optional = false
@@ -1764,73 +2078,121 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 [package.extras]
 dev = ["py-make (>=0.1.0)", "twine", "wheel"]
 notebook = ["ipywidgets (>=6)"]
+slack = ["slack-sdk"]
 telegram = ["requests"]
 
 [[package]]
 name = "traitlets"
-version = "5.1.0"
-description = "Traitlets Python configuration system"
-category = "dev"
+version = "5.3.0"
+description = ""
+category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-test = ["pytest"]
+test = ["pre-commit", "pytest"]
 
 [[package]]
 name = "typed-ast"
-version = "1.4.3"
+version = "1.5.4"
 description = "a fork of Python 2 and 3 ast modules with type comment support"
 category = "dev"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "typing-extensions"
-version = "3.10.0.2"
-description = "Backported and Experimental Type Hints for Python 3.5+"
+version = "4.3.0"
+description = "Backported and Experimental Type Hints for Python 3.7+"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.7"
+
+[[package]]
+name = "tzdata"
+version = "2022.1"
+description = "Provider of IANA time zone data"
+category = "main"
+optional = false
+python-versions = ">=2"
+
+[[package]]
+name = "tzlocal"
+version = "4.2"
+description = "tzinfo object for the local timezone"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+"backports.zoneinfo" = {version = "*", markers = "python_version < \"3.9\""}
+pytz-deprecation-shim = "*"
+tzdata = {version = "*", markers = "platform_system == \"Windows\""}
+
+[package.extras]
+devenv = ["black", "pyroma", "pytest-cov", "zest.releaser"]
+test = ["pytest-mock (>=3.3)", "pytest (>=4.3)"]
 
 [[package]]
 name = "urllib3"
-version = "1.26.7"
+version = "1.26.11"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, <4"
 
 [package.extras]
-brotli = ["brotlipy (>=0.6.0)"]
+brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"]
 secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"]
 socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 
+[[package]]
+name = "validators"
+version = "0.20.0"
+description = "Python Data Validation for Humans™."
+category = "main"
+optional = false
+python-versions = ">=3.4"
+
+[package.dependencies]
+decorator = ">=3.4.0"
+
+[package.extras]
+test = ["pytest (>=2.2.3)", "flake8 (>=2.4.0)", "isort (>=4.2.2)"]
+
 [[package]]
 name = "virtualenv"
-version = "20.8.1"
+version = "20.16.2"
 description = "Virtual Python Environment builder"
 category = "dev"
 optional = false
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
+python-versions = ">=3.6"
 
 [package.dependencies]
-"backports.entry-points-selectable" = ">=1.0.4"
 distlib = ">=0.3.1,<1"
-filelock = ">=3.0.0,<4"
-importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""}
+filelock = ">=3.2,<4"
 platformdirs = ">=2,<3"
-six = ">=1.9.0,<2"
 
 [package.extras]
-docs = ["proselint (>=0.10.2)", "sphinx (>=3)", "sphinx-argparse (>=0.2.5)", "sphinx-rtd-theme (>=0.4.3)", "towncrier (>=19.9.0rc1)"]
-testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)", "pytest (>=4)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.1)", "pytest-mock (>=2)", "pytest-randomly (>=1)", "pytest-timeout (>=1)", "packaging (>=20.0)"]
+docs = ["proselint (>=0.10.2)", "sphinx (>=3)", "sphinx-argparse (>=0.2.5)", "sphinx-rtd-theme (>=0.4.3)", "towncrier (>=21.3)"]
+testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)", "packaging (>=20.0)", "pytest (>=4)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.1)", "pytest-mock (>=2)", "pytest-randomly (>=1)", "pytest-timeout (>=1)"]
+
+[[package]]
+name = "watchdog"
+version = "2.1.9"
+description = "Filesystem events monitoring"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.extras]
+watchmedo = ["PyYAML (>=3.10)"]
 
 [[package]]
 name = "wcwidth"
 version = "0.2.5"
 description = "Measures the displayed width of unicode strings in a terminal"
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
@@ -1838,26 +2200,29 @@ python-versions = "*"
 name = "webencodings"
 version = "0.5.1"
 description = "Character encoding aliases for legacy web content"
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
 [[package]]
 name = "werkzeug"
-version = "2.0.2"
+version = "2.2.1"
 description = "The comprehensive WSGI web application library."
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
+
+[package.dependencies]
+MarkupSafe = ">=2.1.1"
 
 [package.extras]
 watchdog = ["watchdog"]
 
 [[package]]
 name = "widgetsnbextension"
-version = "3.5.1"
+version = "3.6.1"
 description = "IPython HTML widgets for Jupyter"
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
@@ -1866,7 +2231,7 @@ notebook = ">=4.4.1"
 
 [[package]]
 name = "windows-curses"
-version = "2.2.0"
+version = "2.3.0"
 description = "Support for the standard curses module on Windows"
 category = "dev"
 optional = false
@@ -1874,7 +2239,7 @@ python-versions = "*"
 
 [[package]]
 name = "wrapt"
-version = "1.13.2"
+version = "1.14.1"
 description = "Module for decorators, wrappers and monkey patching."
 category = "dev"
 optional = false
@@ -1882,253 +2247,120 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 
 [[package]]
 name = "zipp"
-version = "3.6.0"
+version = "3.8.1"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.extras]
-docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
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+docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"]
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+    {file = "wrapt-1.14.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:40e7bc81c9e2b2734ea4bc1aceb8a8f0ceaac7c5299bc5d69e37c44d9081d43b"},
+    {file = "wrapt-1.14.1-cp39-cp39-musllinux_1_1_aarch64.whl", hash = "sha256:b9b7a708dd92306328117d8c4b62e2194d00c365f18eff11a9b53c6f923b01e3"},
+    {file = "wrapt-1.14.1-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:6a9a25751acb379b466ff6be78a315e2b439d4c94c1e99cb7266d40a537995d3"},
+    {file = "wrapt-1.14.1-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:34aa51c45f28ba7f12accd624225e2b1e5a3a45206aa191f6f9aac931d9d56fe"},
+    {file = "wrapt-1.14.1-cp39-cp39-win32.whl", hash = "sha256:dee0ce50c6a2dd9056c20db781e9c1cfd33e77d2d569f5d1d9321c641bb903d5"},
+    {file = "wrapt-1.14.1-cp39-cp39-win_amd64.whl", hash = "sha256:dee60e1de1898bde3b238f18340eec6148986da0455d8ba7848d50470a7a32fb"},
+    {file = "wrapt-1.14.1.tar.gz", hash = "sha256:380a85cf89e0e69b7cfbe2ea9f765f004ff419f34194018a6827ac0e3edfed4d"},
+]
+zipp = []
diff --git a/{{cookiecutter.repository_name}}/pyproject.toml b/{{cookiecutter.repository_name}}/pyproject.toml
index ee21deb..862520f 100644
--- a/{{cookiecutter.repository_name}}/pyproject.toml
+++ b/{{cookiecutter.repository_name}}/pyproject.toml
@@ -24,18 +24,18 @@ packages = [
 ]
 
 [tool.poetry.dependencies]
-python = "^3.7"
-torch = "^1.7.1"
+python = "^3.8"
+torch = "^1.12.0"
 numpy = "^1.19.2"
-torchvision = "^0.8.2"
+torchvision = "^0.13.0"
 opencv-python = "^4.4.0"
 pytorch-datastream = "^0.4.0"
 pytorch-lantern = "^0.12.0"
+streamlit = "^1.10.0"
 
 [tool.poetry.dev-dependencies]
-guildai = "0.7.4"
+guildai = "0.8.0"
 click = "^7.1.1"
-data-kale = "^0.1.3"
 pylint = "^2.6.0"
 flake8 = "^3.8.4"
 black = "^20.8b1"
@@ -47,7 +47,7 @@ ipywidgets = "^7.6.3"
 poethepoet = "^0.10.0"
 
 [tool.poe.tasks]
-cuda11 = "python -m pip install torch==1.7.1+cu110 torchvision==0.8.2+cu110 -f https://download.pytorch.org/whl/torch_stable.html"
+cuda11 = "python -m pip install torch==1.12.0+cu113 torchvision==0.13.0+cu113 -f https://download.pytorch.org/whl/cu113/torch_stable.html"
 
 [build-system]
 requires = ["poetry-core>=1.0.0"]
diff --git a/{{cookiecutter.repository_name}}/{{cookiecutter.package_name}}/model/prediction.py b/{{cookiecutter.repository_name}}/{{cookiecutter.package_name}}/model/prediction.py
index a42bb15..18acc54 100644
--- a/{{cookiecutter.repository_name}}/{{cookiecutter.package_name}}/model/prediction.py
+++ b/{{cookiecutter.repository_name}}/{{cookiecutter.package_name}}/model/prediction.py
@@ -75,18 +75,20 @@ def stack_class_indices(self, examples):
             device=self.logits.device,
         )
 
-    def loss(self, examples):
-        return self.cross_entropy(examples)
+    def loss(self, examples, reduction="mean"):
+        return self.cross_entropy(examples, reduction)
 
-    def cross_entropy(self, examples):
+    def cross_entropy(self, examples, reduction):
         return F.cross_entropy(
-            self.logits,
-            self.stack_class_indices(examples),
+            self.logits, self.stack_class_indices(examples), reduction=reduction
         )
 
     def accuracy(self, examples):
         return self.logits.argmax(dim=1) == self.stack_class_indices(examples)
 
+    def accuracy(self, examples):
+        return self.logits.argmax(dim=1) == self.stack_class_indices(examples)
+
 
 def text_(draw, text, x, y, fill="black", outline="white", size=12):
     try: