From 6bb794e3692ee4b1fef304be6b7ae3bc632fc43b Mon Sep 17 00:00:00 2001
From: Sebastian Kopf <seb.kopf@gmail.com>
Date: Fri, 3 Jul 2026 12:28:55 -0600
Subject: [PATCH] isoreader superseeded message

---
 .vscode/extensions.json |  5 +++++
 .vscode/settings.json   | 11 +++++++++++
 README.Rmd              |  6 ++++--
 README.md               | 11 +++++------
 isoreader.Rproj         |  1 +
 5 files changed, 26 insertions(+), 8 deletions(-)
 create mode 100644 .vscode/extensions.json
 create mode 100644 .vscode/settings.json

diff --git a/.vscode/extensions.json b/.vscode/extensions.json
new file mode 100644
index 00000000..344f76eb
--- /dev/null
+++ b/.vscode/extensions.json
@@ -0,0 +1,5 @@
+{
+    "recommendations": [
+        "Posit.air-vscode"
+    ]
+}
diff --git a/.vscode/settings.json b/.vscode/settings.json
new file mode 100644
index 00000000..54bfe589
--- /dev/null
+++ b/.vscode/settings.json
@@ -0,0 +1,11 @@
+{
+    "[r]": {
+        "editor.formatOnSave": true,
+        //doesn't work "editor.codeActionsOnSave": {"r.sourceCurrentFile": "always"},
+        "editor.defaultFormatter": "Posit.air-vscode"
+    },
+    "[quarto]": {
+        "editor.formatOnSave": true,
+        "editor.defaultFormatter": "quarto.quarto"
+    }
+}
diff --git a/README.Rmd b/README.Rmd
index 4643b0bc..1e4264ee 100644
--- a/README.Rmd
+++ b/README.Rmd
@@ -17,14 +17,16 @@ version <- as.character(packageVersion("isoreader"))
 # isoreader <a href='https://isoreader.isoverse.org'><img src='man/figures/isoreader_logo_thumb.png' align="right" height="138.5"/></a>
 
 <!-- badges: start -->
+[![Life cycle](https://img.shields.io/badge/lifecycle-superseded-blue.svg)](https://lifecycle.r-lib.org/articles/stages.html)
 [![R build status](https://github.com/isoverse/isoreader/workflows/R-CMD-check/badge.svg)](https://github.com/isoverse/isoreader/actions?workflow=R-CMD-check)
 [![Documentation](https://img.shields.io/badge/docs-online-green.svg)](https://isoreader.isoverse.org/)
 [![DOI](https://joss.theoj.org/papers/10.21105/joss.02878/status.svg)](https://doi.org/10.21105/joss.02878)
 <!-- badges: end -->
 
-## About
+## This R package is deprecated, please check out isoreader's much faster and more versatile successor at [isoreader2.isoverse.org](https://isoreader2.isoverse.org/)
+
 
-> Note: although some functionality is still only available in this package, check out isoreader's much faster and more versatile successor at [isoreader2.isoverse.org](https://isoreader2.isoverse.org/)
+## About
 
 This package is intended as a unified one-stop command line interface to all common IRMS (isotope ratio mass spectrometry) file formats used in stable isotope geochemistry. It is an extension and highly stream-lined re-implementation of the proof-of-concept [isoread](https://github.com/sebkopf/isoread) package and is designed to fit into a larger framework of IRMS data tools that includes the web-based graphical user interface package [isoviewer](https://github.com/isoverse/isoviewer) and the data processing and visualization pipeline [isoprocessor](https://github.com/isoverse/isoprocessor).
 
diff --git a/README.md b/README.md
index ba690cf5..fddc87b5 100644
--- a/README.md
+++ b/README.md
@@ -5,18 +5,17 @@
 
 <!-- badges: start -->
 
+[![Life
+cycle](https://img.shields.io/badge/lifecycle-superseded-blue.svg)](https://lifecycle.r-lib.org/articles/stages.html)
 [![R build
 status](https://github.com/isoverse/isoreader/workflows/R-CMD-check/badge.svg)](https://github.com/isoverse/isoreader/actions?workflow=R-CMD-check)
 [![Documentation](https://img.shields.io/badge/docs-online-green.svg)](https://isoreader.isoverse.org/)
 [![DOI](https://joss.theoj.org/papers/10.21105/joss.02878/status.svg)](https://doi.org/10.21105/joss.02878)
 <!-- badges: end -->
 
-## About
+## This R package is deprecated, please check out isoreader’s much faster and more versatile successor at [isoreader2.isoverse.org](https://isoreader2.isoverse.org/)
 
-> Note: although some functionality is still only available in this
-> package, check out isoreader’s much faster and more versatile
-> successor at
-> [isoreader2.isoverse.org](https://isoreader2.isoverse.org/)
+## About
 
 This package is intended as a unified one-stop command line interface to
 all common IRMS (isotope ratio mass spectrometry) file formats used in
@@ -104,7 +103,7 @@ iso_files <- iso_read_scan(data_folder)
 #> Info: reading file 'full_scan_example.scn' with '.scn' reader...
 #> Info: reading file 'peak_shape_scan_example.scn' with '.scn' reader...
 #> Info: reading file 'time_scan_example.scn' with '.scn' reader...
-#> Info: finished reading 4 files in 0.34 secs
+#> Info: finished reading 4 files in 0.32 secs
 
 iso_files
 #> Data from 4 scan iso files: 
diff --git a/isoreader.Rproj b/isoreader.Rproj
index eaa6b818..64bb14b4 100644
--- a/isoreader.Rproj
+++ b/isoreader.Rproj
@@ -1,4 +1,5 @@
 Version: 1.0
+ProjectId: 5bc7f522-d4f6-4173-b25d-af1c41905286
 
 RestoreWorkspace: Default
 SaveWorkspace: Default